Fotograaf: Kim van Kampen

dhr. prof. dr. A.H.C. (Antoine) van Kampen


  • Faculteit der Natuurwetenschappen, Wiskunde en Informatica
    SILS
  • Bezoekadres
    Science Park A
    Science Park 904  Amsterdam
    Kamernummer: C2.205
  • Postadres:
    Postbus  94215
    1090 GE  Amsterdam
  • A.H.C.vanKampen@uva.nl
    T: 0205667061

2016

  • Harwig, A., Jongejan, A., van Kampen, A. H. C., Berkhout, B., & Das, A. T. (2016). Tat-dependent production of an HIV-1 TAR-encoded miRNA-like small RNA. Nucleic Acids Research, 44(9), 4340-4353. DOI: 10.1093/nar/gkw167 [details / files]
  • Raemy, E., Montessuit, S., Pierredon, S., van Kampen, A. H., Vaz, F. M., & Martinou, J. C. (2016). Cardiolipin or MTCH2 can serve as tBID receptors during apoptosis. Cell Death & Differentiation, 23(7), 1165-1174. DOI: 10.1038/cdd.2015.166 [details]

2015

  • Reshetova, P., Smilde, A. K., Westerhuis, J. A., & van Kampen, A. H. C. (2015). Using Petri nets for experimental design in a multi-organ elimination pathway. Computers in Biology and Medicine, 63, 19-27. DOI: 10.1016/j.compbiomed.2015.05.001 [details]
  • Harwig, A., Herrera-Carrillo, E., Jongejan, A., van Kampen, A. H. C., & Berkhout, B. (2015). Deep Sequence Analysis of AgoshRNA Processing Reveals 3' A Addition and Trimming. Molecular Therapy - Nucleic Acids, 4, e247. DOI: 10.1038/mtna.2015.19 [details / files]
  • Nandal, U. K., Vlietstra, W. J., Byrman, C., Jeeninga, R. E., Ringrose, J. H., van Kampen, A. H. C., ... Moerland, P. D. (2015). Candidate prioritization for low-abundant differentially expressed proteins in 2D-DIGE datasets. BMC Bioinformatics, 16, 25. DOI: 10.1186/s12859-015-0455-x [details / files]
  • Vaz, F. M., Pras-Raves, M., Bootsma, A. H., & van Kampen, A. H. C. (2015). Principles and practice of lipidomics. Journal of inherited metabolic disease, 38(1), 41-52. DOI: 10.1007/s10545-014-9792-6 [details]
  • Willemsen, A. M., Hendrickx, D. M., Hoefsloot, H. C. J., Hendriks, M. M. W. B., Wahl, S. A., Teusink, B., ... van Kampen, A. H. C. (2015). MetDFBA: incorporating time-resolved metabolomics measurements into dynamic flux balance analysis. Molecular BioSystems, 11(1), 137-145. DOI: 10.1039/c4mb00510d [details / files]

2014

  • Cobos Jiménez, V., Bradley, E. J., Willemsen, A. M., van Kampen, A. H. C., Baas, F., & Kootstra, N. A. (2014). Next-generation sequencing of microRNAs uncovers expression signatures in polarized macrophages. Physiological Genomics, 46(3), 91-103. DOI: 10.1152/physiolgenomics.00140.2013 [details]
  • Cobos Jiménez, V., Bradley, E. J., Willemsen, A. M., van Kampen, A. H. C., Baas, F., & Kootstra, N. A. (2014). Next-generation sequencing of microRNAs uncovers expression signatures in polarized macrophages. Physiological Genomics, 46(3), 91-103. DOI: 10.1152/physiolgenomics.00140.2013 [details]
  • Reshetova, P., Smilde, A. K., van Kampen, A. H. C., & Westerhuis, J. A. (2014). Use of prior knowledge for the analysis of high-throughput transcriptomics and metabolomics data. BMC Systems Biology, 8(suppl 2), S2. DOI: 10.1186/1752-0509-8-S2-S2 [details / files]
  • Doorenspleet, M. E., Klarenbeek, P. L., de Hair, M. J. H., van Schaik, B. D. C., Esveldt, R. E. E., van Kampen, A. H. C., ... de Vries, N. (2014). Rheumatoid arthritis synovial tissue harbours dominant B-cell and plasma-cell clones associated with autoreactivity. Annals of the Rheumatic Diseases, 73(4), 756-762. DOI: 10.1136/annrheumdis-2012-202861 [details]
  • Houten, S. M., Denis, S., te Brinke, H., Jongejan, A., van Kampen, A. H. C., Bradley, E. J., ... Wanders, R. J. A. (2014). Mitochondrial NADP(H) deficiency due to a mutation in NADK2 causes dienoyl-CoA reductase deficiency with hyperlysinemia. Human Molecular Genetics, 23(18), 5009-5016. DOI: 10.1093/hmg/ddu218 [details]
  • Piet, J. R., Geldhoff, M., van Schaik, B. D. C., Brouwer, M. C., Valls Seron, M., Jakobs, M. E., ... van de Beek, D. (2014). Streptococcus pneumoniae arginine synthesis genes promote growth and virulence in pneumococcal meningitis. The Journal of Infectious Diseases, 209(11), 1781-1791. DOI: 10.1093/infdis/jit818 [details]
  • Stobbe, M. D., Jansen, G. A., Moerland, P. D., & van Kampen, A. H. C. (2014). Knowledge representation in metabolic pathway databases. Briefings in Bioinformatics, 15(3), 455-470. DOI: 10.1093/bib/bbs060 [details]

2013

  • Madougou, S., Shahand, S., Santcroos, M., van Schaik, B., Benabdelkader, A., van Kampen, A., & Olabarriaga, S. (2013). Characterizing workflow-based activity on a production e-infrastructure using provenance data. Future Generation Computer Systems, 29(8), 1931-1942. DOI: 10.1016/j.future.2013.04.019 [details]
  • Stobbe, M. D., Swertz, M. A., Thiele, I., Rengaw, T., van Kampen, A. H. C., & Moerland, P. D. (2013). Consensus and conflict cards for metabolic pathway databases. BMC Systems Biology, 7, 50. DOI: 10.1186/1752-0509-7-50 [details] [PDF]

2012

  • Caan, M. W. A., Shahand, S., Vos, F. M., van Kampen, A. H. C., & Olabarriaga, S. D. (2012). Evolution of grid-based services for Diffusion Tensor Image analysis. Future Generation Computer Systems, 28(8), 1194-1204. DOI: 10.1016/j.future.2012.03.007 [details]
  • de Vries, M., Oude Munnink, B. B., Deijs, M., Canuti, M., Koekkoek, S. M., Molenkamp, R., ... van der Hoek, L. (2012). Performance of VIDISCA-454 in feces-suspensions and serum. Viruses, 4(8), 1328-1334. DOI: 10.3390/v4081328 [details] [PDF]
  • Klarenbeek, P. L., de Hair, M. J. H., Doorenspleet, M. E., van Schaik, B. D. C., Esveldt, R. E. E., van de Sande, M. G. H., ... de Vries, N. (2012). Inflamed target tissue provides a specific niche for highly expanded T-cell clones in early human autoimmune disease. Annals of the Rheumatic Diseases, 71(6), 1088-1093. DOI: 10.1136/annrheumdis-2011-200612 [details]
  • Madougou, S., Santcroos, M., Benabdelkader, A., van Schaik, B. D., Shahand, S., Korkhov, V., ... Olabarriaga, S. D. (2012). Provenance for distributed biomedical workflow execution. Studies in Health Technology and Informatics, 175, 91-100. DOI: 10.3233/978-1-61499-054-3-91 [details]
  • Shahand, S., Caan, M. W. A., van Kampen, A. H. C., & Olabarriaga, S. D. (2012). Integrated support for neuroscience research: from study design to publication. Studies in Health Technology and Informatics, 175, 195-204. DOI: 10.3233/978-1-61499-054-3-195 [details]
  • Stobbe, M. D., Houten, S. M., van Kampen, A. H. C., Wanders, R. J. A., & Moerland, P. D. (2012). Improving the description of metabolic networks: the TCA cycle as example. The FASEB Journal, 26(9), 3625-3636. DOI: 10.1096/fj.11-203091 [details]

2011

  • Hakvoort, T. B. M., Moerland, P. D., Frijters, R., Sokolović, A., Labruyère, W. T., Vermeulen, J. L. M., ... Sokolović, M. (2011). Interorgan coordination of the murine adaptive response to fasting. The Journal of Biological Chemistry, 286(18), 16332-16343. DOI: 10.1074/jbc.M110.216986 [details]
  • Huis in 't Veld, R. A. G., Willemsen, A. M., van Kampen, A. H. C., Bradley, E. J., Baas, F., Pannekoek, Y., & van den Ende, A. (2011). Deep Sequencing Whole Transcriptome Exploration of the σ Regulon in Neisseria meningitidis. PLoS One, 6(12), [e29002]. DOI: 10.1371/journal.pone.0029002 [details] [PDF]

2010

  • Klarenbeek, P. L., Tak, P. P., van Schaik, B. D. C., Zwinderman, A. H., Jakobs, M. E., Zhang, Z., ... de Vries, N. (2010). Human T-cell memory consists mainly of unexpanded clones. Immunology letters, 133(1), 42-48. DOI: 10.1016/j.imlet.2010.06.011 [details]
  • Luyf, A. C. M., van Schaik, B. D. C., de Vries, M., Baas, F., van Kampen, A. H. C., & Olabarriaga, S. D. (2010). Initial steps towards a production platform for DNA sequence analysis on the grid. BMC Bioinformatics, 11(1), 598. DOI: 10.1186/1471-2105-11-598 [details] [PDF]

2009

  • van Hooff, S. R., Koster, J., Hulsen, T., van Schaik, B. D. C., Roos, M., van Batenburg, M. F., ... van Kampen, A. H. C. (2009). The construction of genome-based transcriptional units. Omics, 13(2), 105-114. DOI: 10.1089/omi.2008.0036 [details]

2008

  • Inda, M. A., van Batenburg, M. F., Roos, M., Belloum, A. S. Z., Vasunin, D., Wibisono, A., ... Breit, T. M. (2008). SigWin-detector: A Grid-enabled workflow for discovering enriched windows of genomic features related to DNA sequences. BMC Research Notes, 1, 63. DOI: 10.1186/1756-0500-1-63 [details] [PDF]
  • Willemsen, A. M., Jansen, G. A., Komen, J. C., van Hooff, S., Waterham, H. R., Brites, P. M. T., ... van Kampen, A. H. C. (2008). Organization and integration of biomedical knowledge with concept maps for key peroxisomal pathways. Bioinformatics, 24(16), i21-i27. DOI: 10.1093/bioinformatics/btn274 [details]

2011

  • Stobbe, M. D., Houten, S. M., Jansen, G. A., van Kampen, A. H. C., & Moerland, P. D. (2011). Critical assessment of human metabolic pathway databases: a stepping stone for future integration. BMC Systems Biology, 5(1), [165]. DOI: 10.1186/1752-0509-5-165 [details] [PDF]
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