Fotograaf: onbekend

dhr. prof. dr. C.G. (Chris) de Koster


  • Faculteit der Natuurwetenschappen, Wiskunde en Informatica
    SILS
  • Bezoekadres
    Science Park A
    Science Park 904  Amsterdam
    Kamernummer: C2.263
  • Postadres:
    Postbus  94215
    1090 GE  Amsterdam
  • C.G.deKoster@uva.nl
    T: 0205255457

CSC projects

The group embeds PhD projects from CSC laureates. A CSC project ought to be in line with our research programme. Please contact us in an early stage when you intend to submit a CSC grant proposal.

2016

  • Zheng, L., Abhyankar, W., Ouwerling, N., Dekker, H. L., van Veen, H., van der Wel, N. N., ... de Koster, C. G. (2016). Bacillus subtilis Spore Inner Membrane Proteome. Journal of Proteome Research, 15(2), 585-594. DOI: 10.1021/acs.jproteome.5b00976 [details]
  • de Rijke, E., Schoorl, J. C., Cerli, C., Vonhof, H. B., Verdegaal, S. J. A., Vivó-Truyols, G., ... de Koster, C. G. (2016). The use of δ2H and δ18O isotopic analyses combined with chemometrics as a traceability tool for the geographical origin of bell peppers. Food Chemistry, 204, 122-128. DOI: 10.1016/j.foodchem.2016.01.134 [details] [PDF]

2015

  • Stelder, S. K., Mahmud, S. A., Dekker, H. L., de Koning, L. J., Brul, S., & de Koster, C. G. (2015). Temperature Dependence of the Proteome Profile of the Psychrotolerant Pathogenic Food Spoiler Bacillus weihenstephanensis Type Strain WSBC 10204. Journal of Proteome Research, 14(5), 2169-2176. DOI: 10.1021/pr501307t [details]
  • de Rijke, E., Fellner, C., Westerveld, J., Lopatka, M., Cerli, C., Kalbitz, K., & de Koster, C. G. (2015). Determination of n-alkanes in C. annuum (bell pepper) fruit and seed using GC-MS: comparison of extraction methods and application to samples of different geographical origin. Analytical and Bioanalytical Chemistry, 407(19), 5729-5738. DOI: 10.1007/s00216-015-8755-6 [details] [PDF]
  • Borirak, O., Rolfe, M. D., de Koning, L. J., Hoefsloot, H. C. J., Bekker, M., Dekker, H. L., ... Hellingwerf, K. J. (2015). Time-series analysis of the transcriptome and proteome of Escherichia coli upon glucose repression. Biochimica et Biophysica Acta. Proteins and Proteomics, 1854(10, Part A), 1269-1279. DOI: 10.1016/j.bbapap.2015.05.017 [details] [PDF]
  • Borirak, O., de Koning, L. J., van der Woude, A. D., Hoefsloot, H. C. J., Dekker, H. L., Roseboom, W., ... Hellingwerf, K. J. (2015). Quantitative proteomics analysis of an ethanol- and a lactate-producing mutant strain of Synechocystis sp. PCC6803. Biotechnology for Biofuels, 8, [111]. DOI: 10.1186/s13068-015-0294-z [details] [PDF]
  • Gómez-Molero, E., de Boer, A. D., Dekker, H. L., Moreno-Martínez, A., Kraneveld, E. A., Ichsan, . U., ... de Groot, P. W. J. (2015). Proteomic analysis of hyperadhesive Candida glabrata clinical isolates reveals a core wall proteome and differential incorporation of adhesins. FEMS Yeast Research, 15(8), [fov098]. DOI: 10.1093/femsyr/fov098 [details]

2014

  • Klis, F. M., de Koster, C. G., & Brul, S. (2014). Cell Wall-Related Bionumbers and Bioestimates of Saccharomyces cerevisiae and Candida albicans. Eukaryotic Cell, 13(1), 2-9. DOI: 10.1128/EC.00250-13 [details] [PDF]

2013

  • Abhyankar, W., Hossain, A. H., Djajasaputra, A., Permpoonpattana, P., ter Beek, A., Dekker, H. L., ... de Koster, C. G. (2013). In pursuit of protein targets: proteomic characterization of bacterial spore outer layers. Journal of Proteome Research, 12(10), 4507-4521. DOI: 10.1021/pr4005629 [details]
  • Heilmann, C. J., Sorgo, A. G., Mohammadi, S., Sosinska, G. J., de Koster, C. G., Brul, S., ... Klis, F. M. (2013). Surface stress induces a conserved cell wall stress response in the pathogenic fungus Candida albicans. Eukaryotic Cell, 12(2), 254-264. DOI: 10.1128/EC.00278-12 [details]
  • McLoughlin, F., Arisz, S. A., Dekker, H. L., Kramer, G., de Koster, C. G., Haring, M. A., ... Testerink, C. (2013). Identification of novel candidate phosphatidic acid-binding proteins involved in the salt-stress response of Arabidopsis thaliana roots. Biochemical Journal, 450(3), 573-581. DOI: 10.1042/BJ20121639 [details]
  • Sorgo, A. G., Brul, S., de Koster, C. G., de Koning, L. J., & Klis, F. M. (2013). Iron restriction-induced adaptations in the wall proteome of Candida albicans. Microbiology - SGM, 159(8), 1673-1682. DOI: 10.1099/mic.0.065599-0 [details]
  • Sorgo, A. G., Heilmann, C. J., Brul, S., de Koster, C. G., & Klis, F. M. (2013). Beyond the wall: Candida albicans secret(e)s to survive. FEMS Microbiology Letters, 338(1), 10-17. DOI: 10.1111/1574-6968.12049 [details]
  • Backhaus, K., Rippert, D., Heilmann, C. J., Sorgo, A. G., de Koster, C. G., Klis, F. M., ... Heinisch, J. J. (2013). Mutations in SNF1 complex genes affect yeast cell wall strength. European Journal of Cell Biology, 92(12), 383-395. DOI: 10.1016/j.ejcb.2014.01.001 [details]

2012

  • Buncherd, H., Nessen, M. A., Nouse, N., Stelder, S. K., Roseboom, W., Dekker, H. L., ... de Jong, L. (2012). Selective enrichment and identification of cross-linked peptides to study 3-D structures of protein complexes by mass spectrometry. Journal of Proteomics, 75(7), 2205-2215. DOI: 10.1016/j.jprot.2012.01.025 [details]
  • Ene, I. V., Heilmann, C. J., Sorgo, A. G., Walker, L. A., de Koster, C. G., Munro, C. A., ... Brown, A. J. P. (2012). Carbon source-induced reprogramming of the cell wall proteome and secretome modulates the adherence and drug resistance of the fungal pathogen Candida albicans. PROTEOMICS, 12(21), 3164-3179. DOI: 10.1002/pmic.201200228 [details]
  • Postmus, J., Aardema, R., de Koning, L. J., de Koster, C. G., Brul, S., & Smits, G. J. (2012). Isoenzyme expression changes in response to high temperature determine the metabolic regulation of increased glycolytic flux in yeast. FEMS Yeast Research, 12, 571-581. DOI: 10.1111/j.1567-1364.2012.00807.x [details]
  • Jahn, D., Schramm, S., Schnölzer, M., Heilmann, C. J., de Koster, C. G., Schütz, W., ... Alsheimer, M. (2012). A truncated lamin A in the Lmna (-/-) mouse line: implications for the understanding of laminopathies. Nucleus (Austin), 3(5), 463-474. DOI: 10.4161/nucl.21676 [details]

2011

  • Abhyankar, W., ter Beek, A., Dekker, H., Kort, R., Brul, S., & de Koster, C. G. (2011). Gel-free proteomic identification of the Bacillus subtilis insoluble spore coat protein fraction. PROTEOMICS, 11, 4541-4550. DOI: 10.1002/pmic.201100003 [details]
  • Brul, S., van Beilen, J., Caspers, M., O'Brien, A., de Koster, C., Oomes, S., ... ter Beek, A. (2011). Challenges and advances in systems biology analysis of Bacillus spore physiology; molecular differences between an extreme heat resistant spore forming Bacillus subtilis food isolate and a laboratory strain. Food Microbiology, 28(2), 221-227. DOI: 10.1016/j.fm.2010.06.011 [details]
  • Heilmann, C. J., Sorgo, A. G., Siliakus, A. R., Dekker, H. L., Brul, S., de Koster, C. G., ... Klis, F. M. (2011). Hyphal induction in the human fungal pathogen Candida albicans reveals a characteristic wall protein profile. Microbiology - SGM, 157(8), 2297-2307. DOI: 10.1099/mic.0.049395-0 [details]
  • Klis, F. M., de Koster, C. G., & Brul, S. (2011). A mass spectrometric view of the fungal wall proteome. Future Microbiology, 6(8), 941-951. DOI: 10.2217/FMB.11.72 [details]
  • Koblenz, T. S., Dekker, H. L., de Koster, C. G., van Leeuwen, P. W. N. M., & Reek, J. N. H. (2011). Bis(metallo) capsules based on two ionic diphosphines. Chemistry - An Asian Journal, 6(9), 2431-2443. DOI: 10.1002/asia.201100073 [details]
  • Koblenz, T. S., Dekker, H. L., de Koster, C. G., van Leeuwen, P. W. N. M., & Reek, J. N. H. (2011). Control of the coordination geometry around platinum by a supramolecular capsule. European Journal of Inorganic Chemistry, (31), 4837-4845. DOI: 10.1002/ejic.201100809 [details]
  • Koblenz, T. S., Dekker, H. L., de Koster, C. G., van Leeuwen, P. W. N. M., & Reek, J. N. H. (2011). Diphosphine capsules for transition-metal encapsulation. Chemistry - An Asian Journal, 6(9), 2444-2462. DOI: 10.1002/asia.201100092 [details]
  • Kramer, G., Kasper, P. T., de Jong, L., & de Koster, C. G. (2011). Quantitation of newly synthesized proteins by pulse labeling with azidohomoalanine. In K. Gevaert, & J. Vandekerckhove (Eds.), Gel-free proteomics: methods and protocols. (pp. 169-181). (Methods in molecular biology; No. 753). [S.l.]: Humana Press. DOI: 10.1007/978-1-61779-148-2_12 [details]
  • Kraneveld, E. A., de Soet, J. J., Deng, D. M., Dekker, H. L., de Koster, C. G., Klis, F. M., ... de Groot, P. W. J. (2011). Identification and differential gene expression of adhesin-like wall proteins in Candida glabrata biofilms. Mycopathologia, 172(6), 415-427. DOI: 10.1007/s11046-011-9446-2 [details]
  • Sorgo, A. G., Heilmann, C. J., Dekker, H. L., Bekker, M., Brul, S., de Koster, C. G., ... Klis, F. M. (2011). Effects of fluconazole on the secretome, the wall proteome, and wall integrity of the clinical fungus Candida albicans. Eukaryotic Cell, 10(8), 1071-1081. DOI: 10.1128/EC.05011-11 [details]
  • Sosinska, G. J., de Koning, L. J., de Groot, P. W. J., Manders, E. M. M., Dekker, H. L., Hellingwerf, K. J., ... Klis, F. M. (2011). Mass spectrometric quantification of the adaptations in the wall proteome of Candida albicans in response to ambient pH. Microbiology - SGM, 157(1), 136-146. DOI: 10.1099/mic.0.044206-0 [details]
  • Buerth, C., Heilmann, C. J., Klis, F. M., de Koster, C. G., Ernst, J. F., & Tielker, D. (2011). Growth-dependent secretome of Candida utilis. Microbiology - SGM, 157(9), 2493-2503. DOI: 10.1099/mic.0.049320-0 [details]
  • Heijnis, W. H., Dekker, H. L., de Koning, L. J., Wierenga, P. A., Westphal, A. H., de Koster, C. G., ... van Berkel, W. J. H. (2011). Identification of the peroxidase-generated intermolecular dityrosine cross-link in bovine alfa-lactalbumin. Journal of Agricultural and Food Chemistry, 59(1), 444-449. DOI: 10.1021/jf104298y [details]
  • Schild, L., Heyken, A., de Groot, P. W. J., Hiller, E., Mock, M., de Koster, C., ... Hube, B. (2011). Proteolytic cleavage of covalently linked cell wall proteins by Candida albicans Sap9 and Sap10. Eukaryotic Cell, 10(1), 98-109. DOI: 10.1128/EC.00210-10 [details]

2010

  • Sorgo, A. G., Heilmann, C. J., Dekker, H. L., Brul, S., de Koster, C. G., & Klis, F. M. (2010). Mass spectrometric analysis of the secretome of Candida albicans. Yeast, 27(8), 661-672. DOI: 10.1002/yea.1775 [details]
  • Backhaus, K., Heilmann, C. J., Sorgo, A. G., Purschke, G., de Koster, C. G., Klis, F. M., & Heinisch, J. J. (2010). A systematic study of the cell wall composition of Kluyveromyces lactis. Yeast, 27(8), 647-660. DOI: 10.1002/yea.1781 [details]
  • de Boer, A. D., de Groot, P. W. J., Weindl, G., Schaller, M., Riedel, D., Diez-Orejas, R., ... Weig, M. (2010). The Candida albicans cell wall protein Rhd3/Pga29 is abundant in the yeast form and contributes to virulence. Yeast, 27(8), 611-624. DOI: 10.1002/yea.1790 [details]

2009

  • Kramer, G., Sprenger, R. R., Back, J. W., Dekker, H. L., Nessen, M. A., van Maarseveen, J. H., ... de Koster, C. G. (2009). Identification and quantitation of newly synthesized proteins in Escherichia coli by enrichment of azidohomoalanine-labeled peptides with diagonal chromatography. Molecular & Cellular Proteomics, 8(7), 1599-1611. DOI: 10.1074/mcp.M800392-MCP200 [details]
  • Nessen, M. A., Kramer, G., Back, J. W., Baskin, J. M., Smeenk, L. E. J., de Koning, L. J., ... de Koster, C. G. (2009). Selective enrichment of azide-containing peptides from complex mixtures. Journal of Proteome Research, 8(7), 3702-3711. DOI: 10.1021/pr900257z [details]
  • Wegdam, W., Moerland, P. D., Buist, M. R., Ver Loren van Themaat, E., Bleijlevens, B., Hoefsloot, H. C. J., ... Aerts, J. F. M. G. (2009). Classification-based comparison of pre-processing methods for interpretation of mass spectrometry generated clinical datasets. Proteome Science, 7, 19. DOI: 10.1186/1477-5956-7-19 [details] [PDF]
  • de Groot, P. W. J., Brandt, B. W., Horiuchi, H., Ram, A. F. J., de Koster, C. G., & Klis, F. M. (2009). Comprehensive genomic analysis of cell wall genes in Aspergillus nidulans. Fungal Genetics and Biology, 46(1), S72-S81. DOI: 10.1016/j.fgb.2008.07.022 [details]
  • Boot, R. G., van Breemen, M. J., Wegdam, W., Sprenger, R. R., de Jong, S., Speijer, D., ... Aerts, J. M. F. G. (2009). Gaucher disease: a model disorder for biomarker discovery. Expert Review of Proteomics, 6(4), 411-419. DOI: 10.1586/epr.09.54 [details]
  • Henderickx, H. J. W., Raemakers-Franken, P. C., van der Wal, S., de Koster, C. G., Duchateau, A. L. L., & Sonke, T. (2009). Flow injection analysis electrospray ionization mass spectrometry for high-throughput screening of a gene library for amidase activity. Analytical Biochemistry, 394(2), 159-163. DOI: 10.1016/j.ab.2009.07.018 [details]
  • Moreno-Ruiz, E., Ortu, G., de Groot, P. W. J., Cottier, F., Loussert, C., Prévost, M. C., ... d'Enfert, C. (2009). The GPI-modified proteins Pga59 and Pga62 of Candida albicans are required for cell wall integrity. Microbiology - SGM, 155(6), 2004-2020. DOI: 10.1099/mic.0.028902-0 [details]

2008

  • Bleijlevens, B., van Breemen, M. J., Donker-Koopman, W. E., de Koster, C. G., & Aerts, J. M. F. G. (2008). Detection of mutant protein in complex biological samples: Glucocerebrosidase mutations in Gaucher’s disease. Analytical Biochemistry, 372(1), 52-61. DOI: 10.1016/j.ab.2007.09.033 [details]
  • Peters, R., Tonoli, D., van Duin, M., Mommers, J., Mengerink, Y., Wilbers, A. T. M., ... van der Wal, S. (2008). Low-molecular-weight model study of peroxide cross-linking of ethylene-propylene (-diene) rubber using gas chromatography and mass spectrometry: I. Combination reactions of alkanes. Journal of Chromatography A, 1201(2), 141-150. DOI: 10.1016/j.chroma.2008.03.092 [details]
  • Peters, R., van Duin, M., Tonoli, D., Kwakkenbos, G., Mengerink, Y., van Benthem, R. A. T. M., ... van der Wal, S. (2008). Low-molecular-weight model study of peroxide cross-linking of ethylene-propylene-diene rubber using gas chromatography and mass spectrometry: II. Addition and combination reactions. Journal of Chromatography A, 1201(2), 151-160. DOI: 10.1016/j.chroma.2008.05.067 [details]
  • Sosinska, G. J., de Groot, P. W. J., Teixeira De Mattos, M. J., Dekker, H. L., de Koster, C. G., Hellingwerf, K. J., & Klis, F. M. (2008). Hypoxic conditions and iron restriction affect the cell-wall proteome of Candida albicans grown under vagina-simulative conditions. Microbiology - SGM, 154(2), 510-520. DOI: 10.1099/mic.0.2007/012617-0 [details]
  • Yin, Q. Y., de Groot, P. W. J., de Koster, C. G., & Klis, F. M. (2008). Mass spectrometry-based proteomics of fungal wall glycoproteins. Trends in Microbiology, 16(1), 20-26. DOI: 10.1016/j.tim.2007.10.011 [details]
  • de Groot, P. W. J., Kraneveld, E. A., Yin, Q. Y., Dekker, H. L., Groß, U., Crielaard, W., ... Weig, M. (2008). The cell wall of the human pathogen Candida glabrata: differential incorporation of novel adhesin-like wall proteins. Eukaryotic Cell, 7(11), 1951-1964. DOI: 10.1128/EC.00284-08 [details]
  • Aerts, J. M., van Breemen, M. J., Bussink, A. P., Ghauharali, K., Sprenger, R., Boot, R. G., ... de Koster, C. G. (2008). Biomarkers for lysosomal storage disorders: Identification and application as exemplified by chitotriosidase in Gaucher disease. Acta Paediatrica, 97(s457), 7-14. DOI: 10.1111/j.1651-2227.2007.00641.x [details]
  • Bolton, M. D., van Esse, H. P., Vossen, J. H., de Jonge, R., Sterglopoulos, I., Stulemeijer, I. J. E., ... Thomma, B. P. H. J. (2008). The novel Cladosporium fulvum lysin motif effector Ecp6 is a virulence factor with orthologues in other fungal species. Molecular Microbiology, 69(1), 119-136. DOI: 10.1111/j.1365-2958.2008.06270.x [details]
  • Popolo, L., Ragni, E., Carotti, C., Palomares, O., Aardema, R., Back, J. W., ... de Koster, C. G. (2008). Disulfide bond structure and domain organization of yeast beta(1,3)-glucanosyltransferases involved in cell wall biogenesis. The Journal of Biological Chemistry, 283(27), 18553-18565. DOI: 10.1074/jbc.M801562200 [details]
  • van Bloois, E., Dekker, H. L., Houben, E. N. G., Urbanus, M. L., de Koster, C. G., de Gier, J. W., & Luirink, J. (2008). Detection of cross-links between FtsH, YidC, HflK/C suggests a linked role for these proteins in quality control upon insertion of bacterial inner membrane proteins. FEBS Letters, 582(10), 1419-1424. DOI: 10.1016/j.febslet.2008.02.082 [details]

2015

  • Abhyankar, W., Pandey, R., ter Beek, A., Brul, S., de Koning, L. J., & de Koster, C. G. (2015). Reinforcement of Bacillus subtilis spores by cross-linking of outer coat proteins during maturation. Food Microbiology, 45(A), 54-62. DOI: 10.1016/j.fm.2014.03.007 [details]
  • Smelt, J. P., Hoefsloot, H. C., de Koster, C. G., Schuurmans, J. M., ter Kuile, B. H., & Brul, S. (2015). Simulation of the rate of transfer of antibiotic resistance between Escherichia coli strains cultured under well controlled environmental conditions. Food Microbiology, 45(B), 189-194. DOI: 10.1016/j.fm.2014.03.019 [details]

2014

  • Abhyankar, W., de Koning, L. J., Brul, S., & de Koster, C. G. (2014). Spore Proteomics: The Past, Present and the Future. FEMS Microbiology Letters, 358(2), 137-144. DOI: 10.1111/1574-6968.12568 [details]
  • Buncherd, H., Roseboom, W., Ghavim, B., Du, W., de Koning, L. J., de Koster, C. G., & de Jong, L. (2014). Isolation of cross-linked peptides by diagonal strong cation exchange chromatography for protein complex topology studies by peptide fragment fingerprinting from large sequence databases. Journal of Chromatography A, 1348, 34-46. DOI: 10.1016/j.chroma.2014.04.083 [details]
  • Buncherd, H., Roseboom, W., de Koning, L. J., de Koster, C. G., & de Jong, L. (2014). A gas phase cleavage reaction of cross-linked peptides for protein complex topology studies by peptide fragment fingerprinting from large sequence database. Journal of Proteomics, 108, 65-77. DOI: 10.1016/j.jprot.2014.05.003 [details]
This list of publications is extracted from the UvA-Current Research Information System. Questions? Ask the library or the Pure staff of your faculty / institute. Log in to Pure to edit your publications.
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