dhr. dr. L.J. (Leo) de Koning


  • Faculteit der Natuurwetenschappen, Wiskunde en Informatica
    SILS
  • Bezoekadres
    Science Park A
    Science Park 904  Amsterdam
    Kamernummer: C2.261
  • Postadres:
    Postbus  94215
    1090 GE  Amsterdam
  • L.J.deKoning@uva.nl
    T: 0205255682

2016

  • Zheng, L., Abhyankar, W., Ouwerling, N., Dekker, H. L., van Veen, H., van der Wel, N. N., ... de Koster, C. G. (2016). Bacillus subtilis Spore Inner Membrane Proteome. Journal of Proteome Research, 15(2), 585-594. DOI: 10.1021/acs.jproteome.5b00976 [details]

2015

  • Stelder, S. K., Mahmud, S. A., Dekker, H. L., de Koning, L. J., Brul, S., & de Koster, C. G. (2015). Temperature Dependence of the Proteome Profile of the Psychrotolerant Pathogenic Food Spoiler Bacillus weihenstephanensis Type Strain WSBC 10204. Journal of Proteome Research, 14(5), 2169-2176. DOI: 10.1021/pr501307t [details]
  • Vonk, R. J., Wouters, S., Barcaru, A., Vivó-Truyols, G., Eeltink, S., de Koning, L. J., & Schoenmakers, P. J. (2015). Post-polymerization photografting on methacrylate-based monoliths for separation of intact proteins and protein digests with comprehensive two-dimensional liquid chromatography hyphenated with high-resolution mass spectrometry. Analytical and Bioanalytical Chemistry, 407(13), 3817-3829. DOI: 10.1007/s00216-015-8615-4 [details / files]
  • Vonk, R. J., Gargano, A. F. G., Davydova, E., Dekker, H. L., Eeltink, S., de Koning, L. J., & Schoenmakers, P. J. (2015). Comprehensive Two-Dimensional Liquid Chromatography with Stationary-Phase-Assisted Modulation Coupled to High-Resolution Mass Spectrometry Applied to Proteome Analysis of Saccharomyces cerevisiae. Analytical Chemistry, 87(10), 5387-5394. DOI: 10.1021/acs.analchem.5b00708 [details]
  • Borirak, O., Rolfe, M. D., de Koning, L. J., Hoefsloot, H. C. J., Bekker, M., Dekker, H. L., ... Hellingwerf, K. J. (2015). Time-series analysis of the transcriptome and proteome of Escherichia coli upon glucose repression. Biochimica et Biophysica Acta. Proteins and Proteomics, 1854(10, Part A), 1269-1279. DOI: 10.1016/j.bbapap.2015.05.017 [details] [PDF]
  • Borirak, O., de Koning, L. J., van der Woude, A. D., Hoefsloot, H. C. J., Dekker, H. L., Roseboom, W., ... Hellingwerf, K. J. (2015). Quantitative proteomics analysis of an ethanol- and a lactate-producing mutant strain of Synechocystis sp. PCC6803. Biotechnology for Biofuels, 8, [111]. DOI: 10.1186/s13068-015-0294-z [details] [PDF]

2013

  • Abhyankar, W., Hossain, A. H., Djajasaputra, A., Permpoonpattana, P., ter Beek, A., Dekker, H. L., ... de Koster, C. G. (2013). In pursuit of protein targets: proteomic characterization of bacterial spore outer layers. Journal of Proteome Research, 12(10), 4507-4521. DOI: 10.1021/pr4005629 [details]
  • Heilmann, C. J., Sorgo, A. G., Mohammadi, S., Sosinska, G. J., de Koster, C. G., Brul, S., ... Klis, F. M. (2013). Surface stress induces a conserved cell wall stress response in the pathogenic fungus Candida albicans. Eukaryotic Cell, 12(2), 254-264. DOI: 10.1128/EC.00278-12 [details]
  • Sorgo, A. G., Brul, S., de Koster, C. G., de Koning, L. J., & Klis, F. M. (2013). Iron restriction-induced adaptations in the wall proteome of Candida albicans. Microbiology - SGM, 159(8), 1673-1682. DOI: 10.1099/mic.0.065599-0 [details]

2012

  • Buncherd, H., Nessen, M. A., Nouse, N., Stelder, S. K., Roseboom, W., Dekker, H. L., ... de Jong, L. (2012). Selective enrichment and identification of cross-linked peptides to study 3-D structures of protein complexes by mass spectrometry. Journal of Proteomics, 75(7), 2205-2215. DOI: 10.1016/j.jprot.2012.01.025 [details]
  • Postmus, J., Aardema, R., de Koning, L. J., de Koster, C. G., Brul, S., & Smits, G. J. (2012). Isoenzyme expression changes in response to high temperature determine the metabolic regulation of increased glycolytic flux in yeast. FEMS Yeast Research, 12, 571-581. DOI: 10.1111/j.1567-1364.2012.00807.x [details]

2011

  • Heilmann, C. J., Sorgo, A. G., Siliakus, A. R., Dekker, H. L., Brul, S., de Koster, C. G., ... Klis, F. M. (2011). Hyphal induction in the human fungal pathogen Candida albicans reveals a characteristic wall protein profile. Microbiology - SGM, 157(8), 2297-2307. DOI: 10.1099/mic.0.049395-0 [details]
  • Sorgo, A. G., Heilmann, C. J., Dekker, H. L., Bekker, M., Brul, S., de Koster, C. G., ... Klis, F. M. (2011). Effects of fluconazole on the secretome, the wall proteome, and wall integrity of the clinical fungus Candida albicans. Eukaryotic Cell, 10(8), 1071-1081. DOI: 10.1128/EC.05011-11 [details]
  • Sosinska, G. J., de Koning, L. J., de Groot, P. W. J., Manders, E. M. M., Dekker, H. L., Hellingwerf, K. J., ... Klis, F. M. (2011). Mass spectrometric quantification of the adaptations in the wall proteome of Candida albicans in response to ambient pH. Microbiology - SGM, 157(1), 136-146. DOI: 10.1099/mic.0.044206-0 [details]
  • Heijnis, W. H., Dekker, H. L., de Koning, L. J., Wierenga, P. A., Westphal, A. H., de Koster, C. G., ... van Berkel, W. J. H. (2011). Identification of the peroxidase-generated intermolecular dityrosine cross-link in bovine alfa-lactalbumin. Journal of Agricultural and Food Chemistry, 59(1), 444-449. DOI: 10.1021/jf104298y [details]

2009

  • Kramer, G., Sprenger, R. R., Back, J. W., Dekker, H. L., Nessen, M. A., van Maarseveen, J. H., ... de Koster, C. G. (2009). Identification and quantitation of newly synthesized proteins in Escherichia coli by enrichment of azidohomoalanine-labeled peptides with diagonal chromatography. Molecular & Cellular Proteomics, 8(7), 1599-1611. DOI: 10.1074/mcp.M800392-MCP200 [details]
  • Nessen, M. A., Kramer, G., Back, J. W., Baskin, J. M., Smeenk, L. E. J., de Koning, L. J., ... de Koster, C. G. (2009). Selective enrichment of azide-containing peptides from complex mixtures. Journal of Proteome Research, 8(7), 3702-3711. DOI: 10.1021/pr900257z [details]
  • Müller, M. Q., de Koning, L. J., Schmidt, A., Ihling, A., Syha, Y., Rau, O., ... Sinz, A. (2009). An innovative method to study target protein-drug interactions by mass spectrometry. Journal of Medicinal Chemistry, 52(9), 2875-2879. DOI: 10.1021/jm9000665 [details]

2008

  • Popolo, L., Ragni, E., Carotti, C., Palomares, O., Aardema, R., Back, J. W., ... de Koster, C. G. (2008). Disulfide bond structure and domain organization of yeast beta(1,3)-glucanosyltransferases involved in cell wall biogenesis. The Journal of Biological Chemistry, 283(27), 18553-18565. DOI: 10.1074/jbc.M801562200 [details]

2015

  • Abhyankar, W., Pandey, R., ter Beek, A., Brul, S., de Koning, L. J., & de Koster, C. G. (2015). Reinforcement of Bacillus subtilis spores by cross-linking of outer coat proteins during maturation. Food Microbiology, 45(A), 54-62. DOI: 10.1016/j.fm.2014.03.007 [details]

2014

  • Abhyankar, W., de Koning, L. J., Brul, S., & de Koster, C. G. (2014). Spore Proteomics: The Past, Present and the Future. FEMS Microbiology Letters, 358(2), 137-144. DOI: 10.1111/1574-6968.12568 [details]
  • Buncherd, H., Roseboom, W., Ghavim, B., Du, W., de Koning, L. J., de Koster, C. G., & de Jong, L. (2014). Isolation of cross-linked peptides by diagonal strong cation exchange chromatography for protein complex topology studies by peptide fragment fingerprinting from large sequence databases. Journal of Chromatography A, 1348, 34-46. DOI: 10.1016/j.chroma.2014.04.083 [details]
  • Buncherd, H., Roseboom, W., de Koning, L. J., de Koster, C. G., & de Jong, L. (2014). A gas phase cleavage reaction of cross-linked peptides for protein complex topology studies by peptide fragment fingerprinting from large sequence database. Journal of Proteomics, 108, 65-77. DOI: 10.1016/j.jprot.2014.05.003 [details]
This list of publications is extracted from the UvA-Current Research Information System. Questions? Ask the library or the Pure staff of your faculty / institute. Log in to Pure to edit your publications.
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