dhr. dr. L.J. (Leo) de Koning


  • Faculteit der Natuurwetenschappen, Wiskunde en Informatica
    SILS
  • Bezoekadres
    Science Park A
    Science Park 904  Amsterdam
    Kamernummer: C2.261
  • Postadres:
    Postbus  94215
    1090 GE  Amsterdam
  • L.J.deKoning@uva.nl
    T: 0205255682

2017

  • Abhyankar, W., Stelder, S., de Koning, L., de Koster, C., & Brul, S. (2017). 'Omics' for microbial food stability: Proteomics for the development of predictive models for bacterial spore stress survival and outgrowth. International Journal of Food Microbiology, 240, 11-18. DOI: 10.1016/j.ijfoodmicro.2016.05.008 [details]

2016

  • Abhyankar, W. R., Kamphorst, K., Swarge, B. N., van Veen, H., van der Wel, N. N., Brul, S., ... de Koning, L. J. (2016). The Influence of Sporulation Conditions on the Spore Coat Protein Composition of Bacillus subtilis Spores. Frontiers in Microbiology, 7, 1636. DOI: 10.3389/fmicb.2016.01636 [details] [PDF]
  • Zheng, L., Abhyankar, W., Ouwerling, N., Dekker, H. L., van Veen, H., van der Wel, N. N., ... de Koster, C. G. (2016). Bacillus subtilis Spore Inner Membrane Proteome. Journal of Proteome Research, 15(2), 585-594. DOI: 10.1021/acs.jproteome.5b00976 [details]

2015

  • Abhyankar, W., Pandey, R., ter Beek, A., Brul, S., de Koning, L. J., & de Koster, C. G. (2015). Reinforcement of Bacillus subtilis spores by cross-linking of outer coat proteins during maturation. Food Microbiology, 45(A), 54-62. DOI: 10.1016/j.fm.2014.03.007 [details]
  • Stelder, S. K., Mahmud, S. A., Dekker, H. L., de Koning, L. J., Brul, S., & de Koster, C. G. (2015). Temperature Dependence of the Proteome Profile of the Psychrotolerant Pathogenic Food Spoiler Bacillus weihenstephanensis Type Strain WSBC 10204. Journal of Proteome Research, 14(5), 2169-2176. DOI: 10.1021/pr501307t [details]
  • Vonk, R. J., Wouters, S., Barcaru, A., Vivó-Truyols, G., Eeltink, S., de Koning, L. J., & Schoenmakers, P. J. (2015). Post-polymerization photografting on methacrylate-based monoliths for separation of intact proteins and protein digests with comprehensive two-dimensional liquid chromatography hyphenated with high-resolution mass spectrometry. Analytical and Bioanalytical Chemistry, 407(13), 3817-3829. DOI: 10.1007/s00216-015-8615-4 [details / files]
  • Vonk, R. J., Gargano, A. F. G., Davydova, E., Dekker, H. L., Eeltink, S., de Koning, L. J., & Schoenmakers, P. J. (2015). Comprehensive Two-Dimensional Liquid Chromatography with Stationary-Phase-Assisted Modulation Coupled to High-Resolution Mass Spectrometry Applied to Proteome Analysis of Saccharomyces cerevisiae. Analytical Chemistry, 87(10), 5387-5394. DOI: 10.1021/acs.analchem.5b00708 [details]
  • Borirak, O., Rolfe, M. D., de Koning, L. J., Hoefsloot, H. C. J., Bekker, M., Dekker, H. L., ... Hellingwerf, K. J. (2015). Time-series analysis of the transcriptome and proteome of Escherichia coli upon glucose repression. Biochimica et Biophysica Acta. Proteins and Proteomics, 1854(10, Part A), 1269-1279. DOI: 10.1016/j.bbapap.2015.05.017 [details] [PDF]
  • Borirak, O., de Koning, L. J., van der Woude, A. D., Hoefsloot, H. C. J., Dekker, H. L., Roseboom, W., ... Hellingwerf, K. J. (2015). Quantitative proteomics analysis of an ethanol- and a lactate-producing mutant strain of Synechocystis sp. PCC6803. Biotechnology for Biofuels, 8, [111]. DOI: 10.1186/s13068-015-0294-z [details] [PDF]

2014

  • Abhyankar, W., de Koning, L. J., Brul, S., & de Koster, C. G. (2014). Spore Proteomics: The Past, Present and the Future. FEMS Microbiology Letters, 358(2), 137-144. DOI: 10.1111/1574-6968.12568 [details]

2013

  • Abhyankar, W., Hossain, A. H., Djajasaputra, A., Permpoonpattana, P., ter Beek, A., Dekker, H. L., ... de Koster, C. G. (2013). In pursuit of protein targets: proteomic characterization of bacterial spore outer layers. Journal of Proteome Research, 12(10), 4507-4521. DOI: 10.1021/pr4005629 [details]
  • Heilmann, C. J., Sorgo, A. G., Mohammadi, S., Sosinska, G. J., de Koster, C. G., Brul, S., ... Klis, F. M. (2013). Surface stress induces a conserved cell wall stress response in the pathogenic fungus Candida albicans. Eukaryotic Cell, 12(2), 254-264. DOI: 10.1128/EC.00278-12 [details]
  • Sorgo, A. G., Brul, S., de Koster, C. G., de Koning, L. J., & Klis, F. M. (2013). Iron restriction-induced adaptations in the wall proteome of Candida albicans. Microbiology - SGM, 159(8), 1673-1682. DOI: 10.1099/mic.0.065599-0 [details]

2012

  • Buncherd, H., Nessen, M. A., Nouse, N., Stelder, S. K., Roseboom, W., Dekker, H. L., ... de Jong, L. (2012). Selective enrichment and identification of cross-linked peptides to study 3-D structures of protein complexes by mass spectrometry. Journal of Proteomics, 75(7), 2205-2215. DOI: 10.1016/j.jprot.2012.01.025 [details]
  • Postmus, J., Aardema, R., de Koning, L. J., de Koster, C. G., Brul, S., & Smits, G. J. (2012). Isoenzyme expression changes in response to high temperature determine the metabolic regulation of increased glycolytic flux in yeast. FEMS Yeast Research, 12, 571-581. DOI: 10.1111/j.1567-1364.2012.00807.x [details]

2011

  • Heilmann, C. J., Sorgo, A. G., Siliakus, A. R., Dekker, H. L., Brul, S., de Koster, C. G., ... Klis, F. M. (2011). Hyphal induction in the human fungal pathogen Candida albicans reveals a characteristic wall protein profile. Microbiology - SGM, 157(8), 2297-2307. DOI: 10.1099/mic.0.049395-0 [details]
  • Sorgo, A. G., Heilmann, C. J., Dekker, H. L., Bekker, M., Brul, S., de Koster, C. G., ... Klis, F. M. (2011). Effects of fluconazole on the secretome, the wall proteome, and wall integrity of the clinical fungus Candida albicans. Eukaryotic Cell, 10(8), 1071-1081. DOI: 10.1128/EC.05011-11 [details]
  • Sosinska, G. J., de Koning, L. J., de Groot, P. W. J., Manders, E. M. M., Dekker, H. L., Hellingwerf, K. J., ... Klis, F. M. (2011). Mass spectrometric quantification of the adaptations in the wall proteome of Candida albicans in response to ambient pH. Microbiology - SGM, 157(1), 136-146. DOI: 10.1099/mic.0.044206-0 [details]
  • Heijnis, W. H., Dekker, H. L., de Koning, L. J., Wierenga, P. A., Westphal, A. H., de Koster, C. G., ... van Berkel, W. J. H. (2011). Identification of the peroxidase-generated intermolecular dityrosine cross-link in bovine alfa-lactalbumin. Journal of Agricultural and Food Chemistry, 59(1), 444-449. DOI: 10.1021/jf104298y [details]

2009

  • Kramer, G., Sprenger, R. R., Back, J. W., Dekker, H. L., Nessen, M. A., van Maarseveen, J. H., ... de Koster, C. G. (2009). Identification and quantitation of newly synthesized proteins in Escherichia coli by enrichment of azidohomoalanine-labeled peptides with diagonal chromatography. Molecular & Cellular Proteomics, 8(7), 1599-1611. DOI: 10.1074/mcp.M800392-MCP200 [details]
  • Nessen, M. A., Kramer, G., Back, J. W., Baskin, J. M., Smeenk, L. E. J., de Koning, L. J., ... de Koster, C. G. (2009). Selective enrichment of azide-containing peptides from complex mixtures. Journal of Proteome Research, 8(7), 3702-3711. DOI: 10.1021/pr900257z [details]
  • Müller, M. Q., de Koning, L. J., Schmidt, A., Ihling, A., Syha, Y., Rau, O., ... Sinz, A. (2009). An innovative method to study target protein-drug interactions by mass spectrometry. Journal of Medicinal Chemistry, 52(9), 2875-2879. DOI: 10.1021/jm9000665 [details]

2008

  • Popolo, L., Ragni, E., Carotti, C., Palomares, O., Aardema, R., Back, J. W., ... de Koster, C. G. (2008). Disulfide bond structure and domain organization of yeast beta(1,3)-glucanosyltransferases involved in cell wall biogenesis. The Journal of Biological Chemistry, 283(27), 18553-18565. DOI: 10.1074/jbc.M801562200 [details]

2014

  • Buncherd, H., Roseboom, W., Ghavim, B., Du, W., de Koning, L. J., de Koster, C. G., & de Jong, L. (2014). Isolation of cross-linked peptides by diagonal strong cation exchange chromatography for protein complex topology studies by peptide fragment fingerprinting from large sequence databases. Journal of Chromatography A, 1348, 34-46. DOI: 10.1016/j.chroma.2014.04.083 [details]
  • Buncherd, H., Roseboom, W., de Koning, L. J., de Koster, C. G., & de Jong, L. (2014). A gas phase cleavage reaction of cross-linked peptides for protein complex topology studies by peptide fragment fingerprinting from large sequence database. Journal of Proteomics, 108, 65-77. DOI: 10.1016/j.jprot.2014.05.003 [details]
This list of publications is extracted from the UvA-Current Research Information System. Questions? Ask the library or the Pure staff of your faculty / institute. Log in to Pure to edit your publications.
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