dhr. prof. dr. M.T. (Marian) Bubak

Lijst

Faculteit der Natuurwetenschappen, Wiskunde en Informatica
IVI
POSTBUS 94323
1090 GH Amsterdam
Kamernummer: C3.157
M.T.Bubak@uva.nl
T: 0205257447

Publicaties
Nevenwerkzaamheden

refereed(69)
wetenschappelijk(5)
vakpublicatie(4)

2014

R.S. Cushing, A.S.Z. Belloum, M.T. Bubak, C.T.A.M. de Laat & A.M. Oprescu (2014). Exploratory Data Processing Using Non-deterministic Finite Automata. In workshop on Large Scale Distributed Virtual Environments on Clouds and P2P - LSDVE 2014 held in conjunction of Euro-Par. Porto, Portugal.
S. Koulouzis, D. Vasunin, A.S.Z. Belloum & M.T. Bubak (2014). Data Storage Federation for VPH Applications. In Virtual Physiological Human Conference 2014. Trondheim September.
P. Bloem, G.K.D. de Vries, A. Wibisono, P. Groth, A.S.Z. Belloum & M.T. Bubak (2014). Generating scientific documentation for computational experiments using provenance. In 5th International Provenance and Annotation Workshop. Springer.

2013

R. Cushing, S. Koulouzis, A. Belloum & M. Bubak (2013). Applying workflow as a service paradigm to application farming. Concurrency and Computation: Practice and Experience, 26 (6), 1297-1312. doi: 10.1002/cpe.3073
R. Cushing, M. Bubak, A. Belloum & C. de Laat (2013). Beyond Scientific Workflows: Networked Open Processes. In Proceedings: IEEE Ninth International Conference on e-Science: 22-25 October 2013, Beijing, China (pp. 357-364). Los Alamitos, CA: IEEE Computer Society.
R. Cushing, G. Herawan, H. Putra, A. Belloum, M. Bubak & C. de Laat (2013). Distributed Computing on an Ensemble of Browsers. IEEE Internet Computing, 17 (5), 42-61. doi: 10.1109/MIC.2013.3
A. Wibisono, R. Koning, P. Grosso, A. Belloum, M. Bubak & C. de Laat (2013). OIntEd: online ontology instance editor enabling a new approach to ontology development. Software, practice & experience, 43 (11), 1319-1335. doi: 10.1002/spe.2141
M. Baranowski, A. Belloum & M. Bubak (2013). MapReduce Operations with WS-VLAM Workflow Management System. In V. Alexandrov, M. Lees, V. Krzhizhanovskaya, J. Dongarra & P.M.A. Sloot (Eds.), 2013 International Conference on Computational Science Vol. 18. Procedia Computer Science (pp. 2599-2602). Elsevier.

2012

R. Cushing, A.S.Z. Belloum, V. Korkhov, D. Vasyunin, M. Bubak & C. Leguy (2012). Workflow as a service: an approach to workflow farming. In Proceedings of the 21st international symposium on high-performance parallel and distributed computing & co-located workshops: ECMLS'12: June 18-22, 2012, Delft, the Netherlands (pp. 23-31). New York: ACM.
M. Baranowski, A. Belloum, M. Bubak & M. Malawski (2012). Constructing workflows from script applications. Scientific Programming, 20 (4), 359-377. doi: 10.3233/SPR-120358[go to publisher's site]
R. Cushing, S. Koulouzis, R. Strijkers, A.S.Z. Belloum & M. Bubak (2012). Service Level Management for executable papers. In M. Alexander, P. D'Ambra, A. Belloum, G. Bosilca, M. Cannataro, M. Danelutto, B. Di Martino, M. Gerndt, E. Jeannot, R. Namyst, J. Roman, S.L. Scott, J. Larsson Traff, G. Vallée & J. Weidendorfer (Eds.), Euro-Par 2011: parallel processing workshops: CCPI, CGWS, HeteroPar, HiBB, HPCVirt, HPPC, HPSS, MDGS, ProPer, Resilience, UCHPC, VHPC: Bordeaux, France, August 29-September 2, 2011: revised selected papers. - Pt. 2 Vol. 7156. Lecture Notes in Computer Science (pp. 116-123). Heidelberg: Springer.[go to publisher's site]
J. Borgdorff, C. Bona-Casas, M. Mamonski, K. Kurowski, T. Piontek, B Bosak, K. Rycerz, E. Ciepiela, T. Gubala, D. Harezlak, M. Bubak, E. Lorenz & A.G. Hoekstra (2012). A distributed multiscale computation of a tightly coupled model using the Multiscale Modeling Language. In H. Ali, Y. Shi, D. Khazanchi, M. Lees, G.D. van Albada, J. Dongarra & P.M.A. Sloot (Eds.), Proceedings of the International Conference on Computational Science, ICCS 2012 Vol. 9. Procedia Computer Science (pp. 596-605). Elsevier.[go to publisher's site]

2011

A. Belloum, M.A. Inda, D. Vasunin, V. Korkhov, Z. Zhao, H. Rauwerda, T.M. Breit, M. Bubak & L.O. Hertzberger (2011). Collaborative e-Science Experiments and Scientific Workflows. IEEE Internet Computing, 15 (4), 39-47. doi: 10.1109/MIC.2011.87
F. Berretz, S. Skorupa, V. Sander, A. Belloum & M. Bubak (2011). Actor-driven workflow execution in distributed environments. In M.R. Guarracino, F. Vivien, J.L. Tr\"aff, M. Cannataro, M. Danelutto, A. Hast, F. Perla, A. Kn\"upfer, B. Di Martino & M. Alexander (Eds.), Euro-Par 2010 Parallel Processing Workshops Vol. 6586. Lecture Notes in Computer Science (pp. 287-294). Heidelberg: Springer.
R. Cushing, S. Koulouzis, A.S.Z. Belloum & M. Bubak (2011). Prediction-based auto-scaling of scientific workflows. In B. Schulze, O. Rana & E. Madeira (Eds.), Proceedings of the 9th International Workshop on Middleware for Grids, Clouds and e-Science: MGC 2011, co-located with ACM/IFIP/USENIX 12th International Middleware Conference, December 12-16, 2011, Lisbon, Portugal (pp. 1). New York, NY: ACM.[go to publisher's site]
F. Berretz, S. Skorupa, V. Sander, A. Belloum & M. Bubak (2011). Actor-driven workflow execution in distributed environments. In M.R. Guarracino, F. Vivien, J.L. Träff, M. Cannataro, M. Danelutto, A. Hast, F. Perla, A. Knüpfer, B. Di Martino & M. Alexander (Eds.), Euro-Par 2010 parallel processing workshops: HeteroPar, HPPC, HiBB, CoreGrid, UCHPC, HPCF, PROPER, CCPI, VHPC: Ischia, Italy, August 31-September 3, 2010: Revised selected papers Vol. 6586. Lecture Notes in Computer Science (pp. 287-294). Heidelberg: Springer.
J.T. Moscicki, M. Lamanna, M. Bubak & P.M.A. Sloot (2011). Processing moldable tasks on the grid: late job binding with lightweight user-level overlay. Future Generation Computer Systems, 27 (6), 725-736. doi: 10.1016/j.future.2011.02.002
V.V. Krzhizhanovskaya, G.S. Shirshov, N.B. Melnikova, R.G. Belleman, F.I. Rusadi, B.J. Broekhuijsen, B.P. Gouldby, J. Lhomme, B. Balis, M. Bubak, A.L. Pyayt, I.I. Mokhov, A.V. Ozhigin, B. Lang & R.J. Meijer (2011). Flood early warning system: design, implementation and computational modules. In M. Sato, S. Matsuoka, G.D. van Albada, J. Dongarra & P.M.A. Sloot (Eds.), Proceedings of the International Conference on Computational Science, ICCS 2011 Vol. 4. Procedia Computer Science (pp. 106-115). Elsevier.
R. Cushing, S. Koulouzis, A. Belloum & M. Bubak (2011). Dynamic handling for cooperating scientific web services. In Proceedings 2011 IEEE Seventh International Conference on eScience: 5-8 December 2011, Stockholm, Sweden (pp. 232-239). Los Alamitos, California: IEEE.[go to publisher's site]

2010

U. Schwiegelshohn, R.M. Badia, M.T. Bubak, M. Danelutto, S. Dustdar, F. Gagliardi, A. Geiger, L. Hluchy, D. Kranzlmüller, E. Laure, T. Priol, A. Reinefeld, M. Resch, A. Reuter, O. Rienhoff, T. Rüter, P. Sloot, D. Talia, K. Ullmann, R. Yahyapour & G. von Voigt (2010). Perspectives on grid computing. Future Generation Computer Systems, 26 (8), 1104-1115. doi: 10.1016/j.future.2010.05.010

2009

T. Gubala, M.T. Bubak & P.M.A. Sloot (2009). Chapter XXVI: Semantic Integration for Research Environments. In M. Cannataro (Ed.), Handbook of Research on Computational Grid Technologies for Life Sciences, Biomedicine and Healthcare. IGI Publishing, Medical Information Science Reference.
M.T. Bubak, M. Malawski, T. Gubala, M. Kasztelnik, P. Nowakowski, D. Harezlak, T. Bartynski, J. Kocot, E. Ciepiela, W. Funika, D. Król, B. Baliś, M. Assel & A. Tirado-Ramos (2009). Chapter XXVII: Virtual Laboratory for Collaborative Applications. In M. Cannataro (Ed.), Handbook of Research on Computational Grid Technologies for Life Sciences, Biomedicine and Healthcare. IGI Publishing, Medical Information Science Reference.
W. Rzasa & M.T. Bubak (2009). Application of Petri nets to evaluation of Grid applications efficiency. In M.T. Bubak, M. Turala & K. Wiatr (Eds.), Cracow'08 Grid Workshop: October 13-15, 2008 Cracow, Poland: proceedings (pp. 261-269). Academic Computer Centre CYFRONET AGH.
P.M.A. Sloot, P.V. Coveney, G. Ertaylan, V. Müller, C.A. Boucher & M. Bubak (2009). HIV decision support: From molecule to man. Philosophical transactions of the Royal Society of London. Series A, mathematical, physical and engineering sciences, 367 (1898), 2691-2703.[go to publisher's site]
T. Bartynski, M.T. Bubak, T. Gubala, D. Harezlak, M. Kasztelnik, J. Kocot & P. Nowakowski (2009). Environment for collaborative e-science applications: CGW08 tutorial. In M.T. Bubak, M. Turala & K. Wiatr (Eds.), Cracow'08 Grid Workshop: October 13-15, 2008 Cracow, Poland: proceedings (pp. 58-60). Academic Computer Centre CYFRONET AGH.
M.T. Bubak, T. Gubala, M. Malawski, B. Baliś, W. Funika, T. Bartynski, E. Ciepiela, D. Harezlak, M. Kasztelnik, J. Kocot, D. Król, P. Nowakowski, M. Pelczar & M. Assel (2009). A platform for collaborative e-science applications. In KU KDM 2009: druga konferencja uytkownikw komputerw duej mocy: Zakopane, March 1213, 2009: abstracts (pp. 7-9). ACK Cyfronet AGH.
J. Meizner, M. Malawski, S. Naqvi & M.T. Bubak (2009). Threat model for MOCCA component environment. In M.T. Bubak, M. Turala & K. Wiatr (Eds.), Cracow'08 Grid Workshop: October 13-15, 2008 Cracow, Poland: proceedings (pp. 94-102). Academic Computer Centre CYFRONET AGH.
M. Assel, D. van de Vijver, P. Libin, K. Theys, D. Harezlak, B. Ó Nualláin, P. Nowakowski, M. Bubak, A.-M. Vandamme, S. Imbrechts, R. Sangeda, T. Jiang, D. Frentz & P. Sloot (2009). A collaborative environment allowing clinical investigations on integrated biomedical databases. In T. Solomonides, M. Hofmann-Apitus, M. Freudigmann, C. Semler, Y. Legré & M. Kratz (Eds.), Healthgrid research, innovation, and business case: Proceedings of HealthGrid 2009 Vol. 147. Studies in Health Technology and Informatics (pp. 51-61). Amsterdam: IOS Press.

2008

Z. Zhao, A. Belloum, M. Bubak & B. Hertzberger (2008). Support for cooperative experiments in VL-e: from scientific workflows to knowledge sharing. In Fourth IEEE International Conference on eScience (eScience 2008) (pp. 329-330). Los Alamitos, CA: IEEE Computer Society.
A. Wibisono, Z. Zhao, A.S.Z. Belloum & M.T. Bubak (2008). Towards a Virtual Laboratory for interactive parameter Sweep applications on the Grid. In M.T. Bubak, M. Turala & K. Wiatr (Eds.), Cracow'07 Grid Workshop: October 15--17, 2007 Cracow, Poland (pp. 266-271). Academic Computer Centre CYFRONET AGH.
T. Szepieniec & M. Bubak (2008). Investigation of the DAG eligible jobs maximization algorithm in a grid. In Grid 2008: Proceedings of the 2008 9th IEEE/ACM International Conference on Grid Computing: September 29th-October 1st, 2008, Tsukuba, Japan (pp. 340-345). IEEE.
T. Szepieniec & M. Bubak (2008). Evaluation of eligible jobs maximization algorithm for DAG scheduling in grids. In M. Bubak, G.D. van Albada, J. Dongarra & P.M.A. Sloot (Eds.), Computational science - ICCS 2008: 8th International Conference, Kraków, Poland, June 23-25, 2008: Proceedings, part I Vol. 5101. Lecture Notes in Computer Science (pp. 254-263). Berlin: Springer.
K. Rycerz, M. Bubak & P.M.A. Sloot (2008). HLA component based environment for distributed multiscale simulations. In T. Priol & M. Vanneschi (Eds.), From grids to service and pervasive computing (pp. 229-239). New York, NY: Springer.
K.J. Rycerz, M.T. Bubak & P.M.A. Sloot (2008). HLA component model on the example of multiscale simulation. In M.T. Bubak, M. Turala & K. Wiatr (Eds.), Proceedings of Cracow'07 Grid Workshop, Oct 15-17 2007, Cracow, Poland, ACC Cyfronet AGH (pp. 272-275). Academic Computer Centre CYFRONET AGH.
M. Malawski, J. Kocot, E. Ciepiela & M. Bubak (2008). Optimization of application execution in the ViroLab Virtual Laboratory. In M. Bubak, M. Turała & K. Wiatr (Eds.), Cracow' 07 Grid Workshop, October 15-17, 2007 Cracow, Poland: Proceedings (pp. 65-70). Kraków: Academic Computer Centre CYFRONET AGH.
M. Malawski, J. Kocot, I. Ryszka, M.T. Bubak & M. Wieczorek (2008). Optimization of application execution in the GridSpace environment. In S. Gorlatch, P. Fragopoulou & T. Priol (Eds.), CoreGRID integration workshop 2008: Integrated Research in Grid Computing: April 24, Hersonissos, Crete, Greece (pp. 395-405). Heraklion: Crete University Press.
M. Malawski, T. Bartyński & M. Bubak (2008). A tool for building collaborative applications by invocation of Grid Operations. In M. Bubak, G.D. van Albada, J. Dongarra & P.M.A. Sloot (Eds.), Computational science - ICCS 2008: 8th International Conference, Kraków, Poland, June 23-25, 2008: Proceedings, part III Vol. 5103. Lecture Notes in Computer Science (pp. 243-252). Berlin: Springer.
M. Malawski, T. Gubała, M. Kasztelnik, T. Bartynski & M. Bubak (2008). High-level scripting approach for building component-based applications on the Grid. In M. Danelutto, P. Fragopoulou & V. Getov (Eds.), Making grids work: Proceedings of the CoreGRID Workshop on Programming Models, Grid and P2P System Architecture, Grid Systems, Tools and Environments, 12-13 June 2007, Heraklion, Crete, Greece (pp. 309-321). New York, NY: Springer.
B. Łabno, M. Bubak & B. Baliś (2008). A P2P approach to resource discovery in on-line monitoring of Grid workflows. In E. Luque, T. Margalef & D. Benítez (Eds.), Euro-Par 2008: Parallel processing: 14th international Euro-Par conference, Las Palmas de Gran Canaria, Spain, August 26-29, 2008: Proceedings Vol. 5168. Lecture Notes in Computer Science (pp. 37-46). Berlin: Springer.
B. Kowalewski, M. Bubak & B. Baliś (2008). An event-based approach to reducing coupling in large-scale applications. In M. Bubak, G.D. van Albada, J. Dongarra & P.M.A. Sloot (Eds.), Computational science - ICCS 2008: 8th International Conference, Kraków, Poland, June 23-25, 2008: Proceedings, part III Vol. 5103. Lecture Notes in Computer Science (pp. 358-367). Berlin: Springer.
M. Kasztelnik, T. Gubała, M. Malawski & M. Bubak (2008). Development and execution of collaborative application on the ViroLab virtual laboratory. In M. Bubak, M. Turała & K. Wiatr (Eds.), Cracow' 07 Grid Workshop, October 15-17, 2007 Cracow, Poland: Proceedings (pp. 41-46). Kraków: Academic Computer Centre CYFRONET AGH.[go to publisher's site]
T. Gubala, B. Baliś, M. Malawski, M. Kasztelnik, P. Nowakowski, M. Assel, D. Harezlak, T. Bartynski, J. Kocot, E. Ciepiela, D. Król, J. Wach, M. Pelczar, W. Funika & M.T. Bubak (2008). ViroLab Virtual Laboratory. In M.T. Bubak, M. Turala & K. Wiatr (Eds.), Cracow'07 Grid Workshop: October 15--17, 2007 Cracow, Poland (pp. 35-40). Academic Computer Centre CYFRONET AGH.
W. Funika, D. Harezlak, D. Król, P. Pegiel & M.T. Bubak (2008). User interfaces of the Virolab Virtual Laboratory. In M.T. Bubak, M. Turala & K. Wiatr (Eds.), Cracow'07 Grid Workshop: October 15--17, 2007 Cracow, Poland (pp. 47-52). Academic Computer Centre CYFRONET AGH.
W. Funika, M. Zientarski, R.M. Badia, J. Labarta & M.T. Bubak (2008). OCM2PRV: performance visualization of Grid applications based on OCM-G and Paraver. In S. Gorlatch, P. Fragopoulou & T. Priol (Eds.), CoreGRID integration workshop 2008 -- Integrated Research in Grid Computing: April 24, Hersonissos, Crete, Greece (pp. 87-98). Heraklion: Crete University Press.
W. Funika, D. Harężlak, D. Król & M. Bubak (2008). Environment for collaborative development and execution of Virtual Laboratory applications. In M. Bubak, G.D. van Albada, J. Dongarra & P.M.A. Sloot (Eds.), Computational science - ICCS 2008: 8th International Conference, Kraków, Poland, June 23-25, 2008: Proceedings, part III Vol. 5103. Lecture Notes in Computer Science (pp. 446-455). Berlin: Springer.
E. Ciepiela, J. Kocot, T. Gubala, M. Malawski, M. Kasztelnik & M. Bubak (2008). GridSpace Engine of the ViroLab Virtual Laboratory. In M. Bubak, M. Turała & K. Wiatr (Eds.), Cracow' 07 Grid Workshop, October 15-17, 2007 Cracow, Poland: Proceedings (pp. 53-58). Kraków: Academic Computer Centre CYFRONET AGH.[go to publisher's site]
M.T. Bubak, D. Harezlak, P. Nowakowski, T. Gubala & M. Malawski (2008). Appea: a framework for the design and development of business applications on the Grid. In M.T. Bubak, M. Turala & K. Wiatr (Eds.), Cracow'07 Grid Workshop: October 1517, 2007 Cracow, Poland (pp. 220-225). Academic Computer Centre CYFRONET AGH.
T. Bartyński, M. Malawski & M. Bubak (2008). Invocation of Grid operations in the ViroLab Virtual Laboratory. In M. Bubak, M. Turała & K. Wiatr (Eds.), Cracow' 07 Grid Workshop, October 15-17, 2007 Cracow, Poland: Proceedings (pp. 59-64). Kraków: Academic Computer Centre CYFRONET AGH.
T. Bartyński, M. Malawski, T. Gubała & M. Bubak (2008). Universal Grid client: Grid Operation Invoker. In R. Wyrzykowski, J. Dongarra, K. Karczewski & J. Wasniewski (Eds.), Parallel Processing and Applied Mathematics: 7th international conference, PPAM 2007, Gdansk, Poland, September 9-12, 2007: Revised selected papers Vol. 4967. Lecture Notes in Computer Science (pp. 1068-1077). Berlin: Springer.
B. Baliś, M.T. Bubak, M. Pelczar & J. Wach (2008). Provenance tracking and querying in ViroLab. In M.T. Bubak, M. Turala & K. Wiatr (Eds.), Cracow'07 Grid Workshop: October 15--17, 2007 Cracow, Poland (pp. 71-76). Academic Computer Centre CYFRONET AGH.
B. Balis, M. Bubak, M. Pelczar & J. Wach (2008). Provenance tracking and querying in the ViroLab Virtual Laboratory. In T. Priol, L. Lefevre & R. Buyya (Eds.), CCGRID 2008: Eighth IEEE International Symposium on Cluster Computing and the Grid: Proceedings: 19-22 May, 2008, Lyon, France (pp. 675-680). Los Alamitos, CA: IEEE Computer Society.
B. Baliś, M. Bubak, M. Pelczar & J. Wach (2008). Provenance querying for end-users: A drug resistance case study. In M. Bubak, G.D. van Albada, J. Dongarra & P.M.A. Sloot (Eds.), Computational science - ICCS 2008: 8th International Conference, Kraków, Poland, June 23-25, 2008: Proceedings, part III Vol. 5103. Lecture Notes in Computer Science (pp. 80-89). Berlin: Springer.
B. Baliś & M. Bubak (2008). An ontology model for execution records of Grid scientific applications. In Proceedings of the Fourth International Conference on Semantics, Knowledge and Grid: December 3-5, 2008, Beijing, China (pp. 34-41). Los Alamitos, CA: IEEE Computer Society.
B. Baliś, M. Bubak & J. Wach (2008). Provenance tracking in the ViroLab Virtual Laboratory. In R. Wyrzykowski, J. Dongarra, K. Karczewski & J. Wasniewski (Eds.), Parallel Processing and Applied Mathematics: 7th international conference, PPAM 2007, Gdansk, Poland, September 9-12, 2007: Revised selected papers Vol. 4967. Lecture Notes in Computer Science (pp. 381-390). Berlin: Springer.
R.M. Badia, R. Sirvent, M.T. Bubak, W. Funika & P. Machner (2008). Performance monitoring of Grid superscalar: visualization modes. In S. Gorlatch, P. Fragopoulou & T. Priol (Eds.), CoreGRID integration workshop 2008 -- Integrated Research in Grid Computing: April 24, Hersonissos, Crete, Greece (pp. 266-274). Heraklion: Crete University Press.
R.M. Badia, R. Sirvent, M. Bubak, W. Funika & P. Machner (2008). Performance monitoring of GRID superscalar with OCM-G/G-PM: Integration issues. In S. Gorlatch, M. Bubak & T. Priol (Eds.), Achievements in European reseach on Grid systems: CoreGRID Integration Workshop 2006 (selected papers): October 19-20, Krakow, Poland (pp. 193-205). New York, NY: Springer.
M. Assel, P. Nowakowski & M. Bubak (2008). Integrating and accessing medical data resources within the ViroLab Virtual Laboratory. In M. Bubak, G.D. van Albada, J. Dongarra & P.M.A. Sloot (Eds.), Computational science - ICCS 2008: 8th International Conference, Kraków, Poland, June 23-25, 2008: proceedings. - Pt. 3 Vol. 5103. Lecture Notes in Computer Science (pp. 90-99). Berlin: Springer.
B. Balis, M. Bubak & B. Łabno (2008). Monitoring of Grid scientific workflows. Scientific Programming, 16 (2-3), 205-216.
B. Baliś, M. Bubak & M. Wegiel (2008). LGF: A flexible framework for exposing legacy codes as services. Future Generation Computer Systems, 24 (7), 711-719.
P. Sloot, P. Coveney, M.T. Bubak, A.-M. Vandamme, B. Ó Nuallain, D. van de Vijver & C. Boucher (2008). ViroLab: A collaborative decision support system in viral disease treatment. Reviews in Antiviral Therapy, 3, 4-7.
P. Sloot, P. Coveney, M.T. Bubak, A.-M. Vandamme, B. Ó Nualláin, D. van de Vijver & C. Boucher (2008). Multi-science decision support for HIV drug resistance treatment. In T. Solomonides, J.C. Silverstein, J. Saltz, Y. Legré, M. Kratz, I. Foster, V. Breton & J.R. Beck (Eds.), Global healthgrid: e-Science meets biomedical informatics: Proceedings of HealthGrid 2008 Vol. 138. Studies in Health Technology and Informatics (pp. 188-198). Amsterdam: IOS Press.
K. Rycerz, M. Bubak & P.M.A. Sloot (2008). Using HLA and Grid for distributed multiscale simulations. In R. Wyrzykowski, J. Dongarra, K. Karczewski & J. Wasniewski (Eds.), Parallel processing and applied mathematics: 7th international conference, PPAM 2007, Gdansk, Poland, September 9-12, 2007: Revised selected papers Vol. 4967. Lecture Notes in Computer Science (pp. 780-787). Berlin: Springer.
A. Wibisono, Z. Zhao, A. Belloum & M. Bubak (2008). A framework for interactive parameter sweep applications. In M. Bubak, G.D. van Albada, J. Dongarra & P.M.A. Sloot (Eds.), Computational Science - ICCS 2008: 8th International Conference, Kraków, Poland, June 23-25, 2008: Proceedings, part III Lecture Notes in Computer Science (pp. 481-490). Berlin: Springer.
P.M.A. Sloot, A. Tirado-Ramos, G. Ertaylan, B. O Nuallain, D. van de Vijver, C.A. Boucher & M. Bubak (2008). VIROLAB: A distributed decision support system for viral disease treatment. In M. Bubak, M. Turała & K. Wiatr (Eds.), Cracow '07 grid workshop, October 15-17, 2007 Cracow, Poland: Proceedings (pp. 33-34). Kraków: Academic Computer Centre CYFRONET AGH.
K. Rycerz, M. Bubak & P.M.A. Sloot (2008). Dynamic interactions in HLA component model for multiscale simulations. In M. Bubak, G.D. van Albada, J. Dongarra & P.M.A. Sloot (Eds.), Computational Science - ICCS 2008: 8th International Conference, Kraków, Poland, June 23-25, 2008: Proceedings, part II Lecture Notes in Computer Science (pp. 217-226). Berlin: Springer.
T. Gubala, M. Kasztelnik, M. Malawski & M. Bubak (2008). Towards a system-level science support. In M. Bubak, G.D. van Albada, J. Dongarra & P.M.A. Sloot (Eds.), Computational science - ICCS 2008: 8th international conference, Kraków, Poland, June 23-25, 2008: Proceedings: Part I Lecture Notes in Computer Science (pp. 56-65). Berlin: Springer.
M. Bubak, T. Gubala, M. Malawski, B. Balis, W. Funika, T. Bartynski, E. Ciepiela, D. Harezlak, M. Kasztelnik, J. Kocot, D. Krol, P. Nowakowski, M. Pelczar, J. Wach, M. Assel & A. Tirado-Ramos (2008). Virtual laboratory for development and execution of biomedical collaborative applications. In S. Puuronen, M. Pechenizkiy, A. Tsymbal & D. Lee (Eds.), 21st IEEE international symposium on computer-based medical systems (CBMS 2008) (pp. 373-378). Piscataway: IEEE Computer Society Press.
K. Rycerz, M. Bubak, P. Sloot & V. Getov (2008). Problem solving environment for distributed interactive applications. In S. Gorlatch, M. Bubak & T. Priol (Eds.), Achievements in European research on grid systems: CoreGRID Integration Workshop 2006 (selected papers), October 19-20, Krakow, Poland (pp. 55-66). New York, NY: Springer.[go to publisher's site]
A. Tirado-Ramos, P.M.A. Sloot & M. Bubak (2008). Gridbased interactive decision support in biomedicine. In E.-G. Talbi & A.Y. Zomaya (Eds.), Grid computing for bioinformatics and computational biology (Wiley series on bioinformatics : computational techniques and engineering) (pp. 225-246). Hoboken, NJ: Wiley-Interscience.

2013

A.S.Z. Belloum, R. Cushing, S. Koulouzis, V. Korkhov, D. Vasunin, V. Guevara-Masis, Z. Zhao & M. Bubak (2013). Support for Cooperative Experiments in e-Science: From Scientific Workflows to Knowledge Sharing. In I. Roterman-Konieczna (Ed.), Identification of ligand binding site and protein-protein interaction area (Focus on structural biology, 8) (pp. 135-159). Dordrecht: Springer.

2011

J.T. Mościcki, M. Lamanna, M. Bubak & P.M.A. Sloot (2011). Processing moldable tasks on the grid: late job binding with lightweight user-level overlay. Future Generation Computer Systems, 27 (6), 725-736. doi: 10.1016/j.future.2011.02.002

2008

M. Bubak, M. Turała & K. Wiatr (Eds.). (2008). Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings. Kraków: Academic Computer Centre CYFRONET AGH.
A. Belloum, Z. Zhao & M. Bubak (2008). International Workshop on Applications of Workflows in Computational Science (AWCS 08). In M. Bubak, G.D. van Albada, J. Dongarra & P.M.A. Sloot (Eds.), Computational science - ICCS 2008: 8th International Conference, Kraków, Poland, June 23-25, 2008: Proceedings, part III Vol. 5103. Lecture Notes in Computer Science (pp. 459-462). Berlin: Springer.
S. Gorlatch, M. Bubak & T. Priol (Eds.). (2008). Achievements in European research on Grid systems: CoreGRID Integration Workshop 2006 (selected papers), October 19-20, Krakow, Poland. New York: Springer.

2012

S. Koulouzis, R.S. Cushing, A.S.Z. Belloum & M.T. Bubak (2012). Cloud Federation for Sharing Scientific Data. In eScience.
S. Koulouzis, R. Cushing, K.A. Karasavvas, A. Belloum & M. Bubak (2012). Enabling web services to consume and produce large datasets. IEEE Internet Computing, 16 (1), 52-60. doi: 10.1109/MIC.2011.138

2008

K. Rycerz, M. Bubak, P.M.A. Sloot & V. Getov (2008). HLA component based environment for distributed multiscale simulations. (extern rapport, CoreGRID technical report, no TR-0137). : CoreGRID Institute on Grid Systems, Tools, and Environments.
M. Malawski, J. Kocot, I. Ryszka, M. Bubak, M. Wieczorek & T. Fahringer (2008). Optimization of application execution in the GridSpace environment. (extern rapport, CoreGRID technical report, no TR-0131). [S.l.]: Institute on Resource Management and Scheduling, CoreGRID.

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AGH University of Science and Technology
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