dhr. drs. O. (Oskar) Bruning
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Faculteit der Natuurwetenschappen, Wiskunde en Informatica
SILS
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POSTBUS
94215
1090 GE Amsterdam
Kamernummer: C2.272
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O.Bruning@uva.nl
T: 0205257286
2013
- G.J. de Knegt, O. Bruning, M.T. ten Kate, M. de Jong, A. van Belkum, H.P. Endtz, T.M. Breit, I.A.J.M. Bakker-Woudenberg & J.E.M. de Steenwinkel (2013). Rifampicin-induced transcriptome response in rifampicin-resistant Mycobacterium tuberculosis. Tuberculosis, 93 (1), 96-101. doi: 10.1016/j.tube.2012.10.013
2011
- O. Bruning, W Rodenburg, T. Radonic, A.H. Zwinderman, A de Vries, T.M. Breit & M. de Jong (2011). RNA isolation for transcriptomics of human and mouse small skin biopsies. BMC Research Notes, 4 (1), 438. doi: 10.1186/1756-0500-4-438[go to publisher's site]
- C. de Bekker, O. Bruning, M.J. Jonker, T.M. Breit & H.A.B. Wösten (2011). Single cell transcriptomics of neighboring hyphae of Aspergillus niger. Genome Biology, 12 (8), R71. doi: 10.1186/gb-2011-12-8-r71[go to publisher's site]
2010
- O. Bruning, X. Yuan, W. Rodenburg, W. Bruins, C.T. van Oostrom, H. Rauwerda, F.R.A. Wittink, M.J. Jonker, A. de Vries & T.M. Breit (2010). Serious complications in gene-expression studies with stress perturbation: An example of UV-exposed p53-mutant mouse embryonic fibroblasts. Transcription, 1 (3), 159-164. doi: 10.4161/trns.1.3.13487
- M. de Jong, H. Rauwerda, O. Bruning, J. Verkooijen, H.P. Spaink & T.M. Breit (2010). RNA isolation method for single embryo transcriptome analysis in zebrafish. BMC Research Notes, 3 (1), 73. doi: 10.1186/1756-0500-3-73[go to publisher's site]
- N.J.P. ten Broeke-Smits, T.E. Pronk, I. Jongerius, O. Bruning, F.R. Wittink, T.M. Breit, J.A.G. van Strijp, A.C. Fluit & C.H.E. Boel (2010). Operon structure of Staphylococcus aureus. Nucleic Acids Research, 38 (10), 3263-3274. doi: 10.1093/nar/gkq058[go to publisher's site]
2009
- M.J. Jonker, O. Bruning, M. van Iterson, M.M. Schaap, T.V. van der Hoeven, H. Vrieling, R.B. Beems, A. de Vries, H. van Steeg, T.M. Breit & M. Luijten (2009). Finding transcriptomics biomarkers for in vivo identification of (non-)genotoxic carcinogens using wild-type and Xpa/p53 mutant mouse models. Carcinogenesis, 30 (10), 1805-1812.
- W.C. de Leeuw, H. Rauwerda, M.A. Inda, O. Bruning & T.M. Breit (2009). SigWinR; the SigWin-detector updated and ported to R. BMC Research Notes, 2 (1), 205. doi: 10.1186/1756-0500-2-205
2008
- S.B.I. Luppens, D. Kara, L. Bandounas, M.J. Jonker, F.R.A. Wittink, O. Bruning, T.M. Breit, J.M. ten Cate & W. Crielaard (2008). Effect of Veillonella parvula on the antimicrobial resistance and gene expression of Streptococcus mutans grown in a dual-species biofilm. Oral Microbiology and Immunology, 23 (3), 183-189.
- O. Bruning, W. Bruins, M.J. Jonker, E. Zwart, T.V. van der Hoeven, J.L.A. Pennings, H. Rauwerda, A. de Vries & T.M. Breit (2008). The absence of Ser389 phosphorylation in p53 affects the basal gene expression level of many p53-dependent genes and alters the biphasic response to UV exposure in mouse embryonic fibroblasts. Molecular and Cellular Biology, 28 (6), 1974-1987.[go to publisher's site]
2014
- O. Bruning, W Rodenburg, C.T. van Oostrom, M.J. Jonker, M. de Jong, R.J. Dekker, H. Rauwerda, W.A. Ensink, A. de Vries & T.M. Breit (2014). A range finding protocol to support design for transcriptomics experimentation: examples of in-vitro and in-vivo murine UV exposure. PLoS One, 9 (5), e97089. doi: 10.1371/journal.pone.0097089[go to publisher's site]
- M.J. Jonker, W.C. de Leeuw, M. Marinković, F.R.A. Wittink, H. Rauwerda, O. Bruning, W.A. Ensink, A.C. Fluit, C.H. Boel, M. de Jong & T.M. Breit (2014). Absence/presence calling in microarray-based CGH experiments with non-model organisms. Nucleic Acids Research, 42 (11), e94. doi: 10.1093/nar/gku343[go to publisher's site]
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