dhr. prof. dr. R. (Roel) van Driel
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Faculteit der Natuurwetenschappen, Wiskunde en Informatica
SILS
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POSTBUS
94215
1090 GE Amsterdam
Kamernummer: C2.103
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R.vanDriel@uva.nl
T: 0205255150
2014
- P. Verbruggen, T. Heinemann, E. Manders, G. von Bornstaedt, R. van Driel & T. Höfer (2014). Robustness of DNA Repair through Collective Rate Control. PLoS Computational Biology, 10 (1), e1003438. doi: 10.1371/journal.pcbi.1003438[go to publisher's site]
- M. Tark-Dame, H. Jerabek, E.M.M. Manders, D.W. Heermann & R. van Driel (2014). Depletion of the chromatin looping proteins CTCF and cohesin causes chromatin compaction: insight into chromatin folding by polymer modelling. PLoS Computational Biology, 10 (10), e1003877. doi: 10.1371/journal.pcbi.1003877[go to publisher's site]
2013
- M.C. Brink, D.G.E. Piebes, M.L. de Groote, M.S. Luijsterburg, C.S. Casas-Delucchi, R. van Driel, M.G. Rots, M.C. Cardoso & P.J. Verschure (2013). A role for MeCP2 in switching gene activity via chromatin unfolding and HP1γ displacement. PLoS One, 8 (7), e69347. doi: 10.1371/journal.pone.0069347[go to publisher's site]
2012
- M. Tark-Dame, M.S. Luijsterburg, D.W. Heermann & R. van Driel (2012). Understanding genome function: quantitative modeling of chromatin folding and chromatin-associated processes. In K. Rippe (Ed.), Genome organization and function in the cell nucleus (pp. 535-555). Weinheim: Wiley-VCH. http://dx.doi.org/10.1002/9783527639991.ch20
2011
- J. Niedojadlo, C. Perret-Vivancos, K.H. Kalland, D. Cmarko, T. Cremer, R. van Driel & S. Fakan (2011). Transcribed DNA is preferentially located in the perichromatin region of mammalian cell nuclei. Experimental Cell Research, 317 (4), 433-444. doi: 10.1016/j.yexcr.2010.10.026
- M. Tark-Dame, R. van Driel & D.W. Heermann (2011). Chromatin folding – from biology to polymer models and back. Journal of Cell Science, 124 (6), 839-845. doi: 10.1242/jcs.077628[go to publisher's site]
2010
- F. Tessadori, K. Zeng, E. Manders, M. Riool, D. Jackson & R. van Driel (2010). Stable S/MAR-based episomal vectors are regulated at the chromatin level. Chromosome Research, 18 (7), 757-775. doi: 10.1007/s10577-010-9165-4[go to publisher's site]
- M. van Zanten, F. Tessadori, F. McLoughlin, R. Smith, F.F. Millenaar, R. van Driel, L.A.C.J. Voesenek, A.J.M. Peeters & P. Fransz (2010). Photoreceptors CRYTOCHROME2 and phytochrome B control chromatin compaction in Arabidopsis. Plant Physiology, 154 (4), 1686-1696. doi: 10.1104/pp.110.164616
- C. Scassellati, E. Albi, D. Cmarko, C. Tiberi, J. Cmarkova, C. Bouchet‑Marquis, P.J. Verschure, R. van Driel, M. Viola Magni & S. Fakan (2010). Intranuclear sphingomyelin is associated with transcriptionally active chromatin and plays a role in nuclear integrity. Biology of the Cell, 102 (6), 361-375. doi: 10.1042/BC20090139
- M. Haring, R. Bader, M. Louwers, A. Schwabe, R. van Driel & M. Stam (2010). The role of DNA methylation, nucleosome occupancy and histone modifications in paramutation. Plant Journal, 63 (3), 366-378. doi: 10.1111/j.1365-313X.2010.04245.x
- M.S. Luijsterburg, G. von Bornstaedt, A.M. Gourdin, A.Z. Politi, M.J. Moné, D.O. Warmerdam, J. Goedhart, W. Vermeulen, R. van Driel & T. Höfer (2010). Stochastic and reversible assembly of a multiprotein DNA repair complex ensures accurate target site recognition and efficient repair. Journal of Cell Biology, 189 (3), 445-463. doi: 10.1083/jcb.200909175[go to publisher's site]
2009
- C. Dinant, M.S. Luijsterburg, T. Höfer, G. von Bornstaedt, W. Vermeulen, A.B. Houtsmuller & R. van Driel (2009). Assembly of multiprotein complexes that control genome function. Journal of Cell Biology, 185 (1), 21-26.[go to publisher's site]
- M.S. Luijsterburg, C. Dinant, H. Lans, J. Stap, E.S. Wiernasz, S. Lagerwerf, D.O. Warmerdam, M. Lindh, M.C. Brink, J.W. Dobrucki, J.A. Aten, M.I. Fousteri, G. Jansen, N.P. Dantuma, W. Vermeulen, L.H.F. Mullenders, A.B. Houtsmuller, P.J. Verschure & R. van Driel (2009). Heterochromatin protein 1 is recruited to various types of DNA damage. Journal of Cell Biology, 185 (4), 577-586.[go to publisher's site]
- F. Tessadori, M. van Zanten, P. Pavlova, R. Clifton, F. Pontvianne, L.B. Snoek, F.F. Millenaar, R.K. Schulkes, R. van Driel, L.A.C.J. Voesenek, C. Spillane, C.S. Pikaard, P. Fransz & A.J.M. Peeters (2009). PHYTOCHROME B and HISTONE DEACETYLASE 6 control light-induced chromatin compaction in Arabidopsis thaliana. PLOS Genetics, 5 (9), e1000638.[go to publisher's site]
- L. Solimando, M.S. Luijsterburg, L. Vecchio, W. Vermeulen, R. van Driel & S. Fakan (2009). Spatial organization of nucleotide excision repair proteins after UV-induced DNA damage in the human cell nucleus. Journal of Cell Science, 122 (1), 83-91.
- M. Louwers, E. Splinter, R. van Driel, W. de Laat & M. Stam (2009). Studying physical chromatin interactions in plants using Chromosome Conformation Capture (3C). Nature Protocols, 4 (8), 1216-1229.[go to publisher's site]
- M. Louwers, R. Bader, M. Haring, R. van Driel, W. de Laat & M. Stam (2009). Tissue- and expression level–specific chromatin looping at maize b1 epialleles. The Plant Cell, 21 (3), 832-842.
- J. Mateos-Langerak, M. Bohn, W. de Leeuw, O. Giromus, E.M.M. Manders, P.J. Verschure, M.H.G. Indemans, H.J. Gierman, D.W. Heermann, R. van Driel & S. Goetze (2009). Spatially confined folding of chromatin in the interphase nucleus. National Academy of Sciences. Proceedings, 106 (10), 3812-3817.
2008
- S. Yang, D. Illner, K. Teller, I. Solovei, R. van Driel, B. Joffe, T. Cremer, R. Eils & K. Rohr (2008). Structural analysis of interphase X-chromatin based on statistical shape theory. Biochimica et Biophysica Acta-Molecular Cell Research, 1783 (11), 2089-2099.
- J.S. Kanger, V. Subramaniam & R. van Driel (2008). Intracellular manipulation of chromatin using magnetic nanoparticles. Chromosome Research, 16 (3), 511-522.
- E. Gladilin, S. Goetze, J. Mateos-Langerak, R. van Driel, R. Eils & K. Rohr (2008). Shape normalization of 3D cell nuclei using elastic spherical mapping. Journal of Microscopy, 231 (1), 105-114.
- F.J. Bruggeman, I. Oancea & R. van Driel (2008). Exploring the behavior of small eukaryotic gene networks. Journal of Theoretical Biology, 252 (3), 482-487.
- M.S. Luijsterburg, M.F. White, R. van Driel & R.T. Dame (2008). The major architects of chromatin: Architectural proteins in bacteria, archaea and eukaryotes. Critical Reviews in Biochemistry and Molecular Biology, 43 (6), 393-418.
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