Arastehfar, A., Daneshnia, F., Hilmioglu-Polat, S., Ilkit, M., Yasar, M., Polat, F., Metin, D. Y., Dokumcu, Ü. Z., Pan, W., Hagen, F., Boekhout, T., Perlin, D. S., & Lass-Flörl, C. (2021). Genetically related micafungin-resistant Candida parapsilosis blood isolates harbouring novel mutation R658G in hotspot 1 of Fks1p: a new challenge? Journal of Antimicrobial Chemotherapy, 76(2), 418–422. https://doi.org/10.1093/jac/dkaa419[details]
Arastehfar, A., Khanjari, S., Zareshahrabadi, Z., Fang, W., Pan, W., Asadpour, E., Daneshnia, F., Ilkit, M., Boekhout, T., Perlin, D. S., Zand, F., & Zomorodian, K. (2021). Clinical and microbiological features of candiduria in critically ill adult patients in Shiraz, Iran (2016-2018): Deviations from international guidelines and fluconazole therapeutic failure. Medical Mycology, 59(6), 600–607. https://doi.org/10.1093/mmy/myaa092[details]
Arastehfar, A., Yazdanpanah, S., Bakhtiari, M., Fang, W., Pan, W., Mahmoudi, S., Pakshir, K., Daneshnia, F., Boekhout, T., Ilkit, M., Perlin, D. S., Zomorodian, K., & Zand, F. (2021). Epidemiology of candidemia in Shiraz, southern Iran: A prospective multicenter study (2016–2018). Medical Mycology, 59(5), 422–430. https://doi.org/10.1093/mmy/myaa059[details]
Arastehfar, A., de Almeida Júnior, J. N., Perlin, D. S., Ilkit, M., Boekhout, T., & Lopes Colombo, A. (2021). Multidrug-resistant Trichosporon species: underestimated fungal pathogens posing imminent threats in clinical settings. Critical Reviews in Microbiology, 47(6), 679-698. https://doi.org/10.1080/1040841X.2021.1921695[details]
Boekhout, T., Aime, M. C., Begerow, D., Gabaldón, T., Heitman, J., Kemler, M., Khayhan, K., Lachance, M-A., Louis, E. J., Sun, S., Vu, D., & Yurkov, A. (2021). The evolving species concepts used for yeasts: from phenotypes and genomes to speciation networks. Fungal Diversity, 109, 27-55. https://doi.org/10.1007/s13225-021-00475-9[details]
Boekhout, T., Amend, A. S., El Baidouri, F., Gabaldon, T., Geml, J., Mittelbach, M., Robert, V., Tan, C. S., Turchetti, B., Vu, D., Wang, Q-M., & Yurkov, A. (2021). Trends in yeast diversity discovery. Fungal Diversity. https://doi.org/10.1007/s13225-021-00494-6
Cao, B., Haelewaters, D., Schoutteten, N., Begerow, D., Boekhout, T., Giachini, A. J., Gorjon, S. P., Gunde-Cimerman, N., Hyde, K. D., Kemler, M., Li, G-J., Liu, D-M., Liu, X-Z., Nuytinck, J., Papp, V., Savchenko, A., Savchenko, K., Tedersoo, L., Theelen, B., ... Zhao, R-L. (2021). Delimiting species in Basidiomycota: a review. Fungal Diversity, 109(1), 181-237. https://doi.org/10.1007/s13225-021-00479-5[details]
Crous, P. W., Cowan, D. A., Maggs‐Kölling, G., Yilmaz, N., Thangavel, R., Wingfield, M. J., Noordeloos, M. E., Dima, B., Brandrud, T. E., Jansen, G. M., Morozova, O. V., Vila, J., Shivas, R. G., Tan, Y. P., Bishop‐Hurley, S., Lacey, E., Marney, T. S., Larsson, E., Le Floch, G., ... Groenewald, J. Z. (2021). Fungal Planet description sheets: 1182–1283. Persoonia - Molecular Phylogeny and Evolution of Fungi, 46, 313-528. https://doi.org/10.3767/persoonia.2021.46.11
Crous, P. W., Lombard, L., Sandoval-Denis, M., Seifert, K. A., Schroers, H-J., Chaverri, P., Gené, J., Guarro, J., Hirooka, Y., Bensch, K., Kema, G. H. J., Lamprecht, S. C., Cai, L., Rossman, A. Y., Stadler, M., Summerbell, R. C., Taylor, J. W., Ploch, S., Visagie, C. M., ... Thines, M. (2021). Fusarium: more than a node or a foot-shaped basal cell. Studies in Mycology, 98, [100116]. https://doi.org/10.1016/j.simyco.2021.100116
Hafez, A., Futami, R., Arastehfar, A., Daneshnia, F., Miguel, A., Roig, F. J., Soriano, B., Perez-Sánchez, J., Boekhout, T., Gabaldón, T., & Llorens, C. (2021). SeqEditor: an application for primer design and sequence analysis with or without GTF/GFF files. Bioinformatics, 37(11), 1610–1612. https://doi.org/10.1093/bioinformatics/btaa903[details]
Kord, M., Elmimoghaddam, A., Hashemi, S. J., Reziae, S., Daie Ghazvini, R., Salehi, M., Abdollahi, A., Ahmadi, A., Getso, M. I., Boekhout, T., & Khodavaisy, S. (2021). Comparison of PCR-RFLP with 21-plex PCR and rDNA Sequencing for Identification of Clinical Yeast Isolates. Mycopathologia, 186, 213-220. https://doi.org/10.1007/s11046-020-00522-0[details]
Mixão, V., Saus, E., Boekhout, T., & Gabaldón, T. (2021). Extreme diversification driven by parallel events of massive loss of heterozygosity in the hybrid lineage of Candida albicans. Genetics, 217(2), [iyaa004]. https://doi.org/10.1093/genetics/iyaa004[details]
Nwaefuna, A. E., Rumbold, K., Boekhout, T., & Zhou, N. (2021). Bioethanolic yeasts from dung beetles: Tapping the potential of extremophilic yeasts for improvement of lignocellulolytic feedstock fermentation. Biotechnology for Biofuels, 14, [86]. https://doi.org/10.1186/s13068-021-01940-y[details]
Raghoonundon, B., Zhao, R-L., He, M-Q., Boekhout, T., Buyck, B., Cui, B-K., Davoodian, N., Geml, J., Kakishima, M., Li, T-H., McKenzie, E. H. C., Raspé, O., Vellinga, E. C., Verbeken, A., Vizzini, A., & Hyde, K. D. (2021). www.basidio.org: An Online Platform for the Classification, Identification and Nomenclature of Taxa within Basidiomycota. Chiang Mai Journal of Science, 48(5), 1186-1198. https://epg.science.cmu.ac.th/ejournal/journal-detail.php?id=11552[details]
Rhimi, W., Theelen, B., Boekhout, T., Aneke, C. I., Otranto, D., & Cafarchia, C. (2021). Conventional therapy and new antifungal drugs against Malassezia infections. Medical Mycology, 59(3), 215–234. https://doi.org/10.1093/mmy/myaa087[details]
Shi, D., Haas, P-J., Boekhout, T., Hahn, R. C., & Hagen, F. (2021). Neglecting Genetic Diversity Hinders Timely Diagnosis of Cryptococcus Infections. Journal of Clinical Microbiology, 59(4), [e02837-20]. https://doi.org/10.1128/JCM.02837-20[details]
Theelen, B., Christinaki, A. C., Dawson, Jr, T. L., Boekhout, T., & Kouvelis, V. N. (2021). Comparative analysis of Malassezia furfur mitogenomes and the development of a mitochondria-based typing approach. FEMS Yeast Research, 21(7), [foab051]. https://doi.org/10.1093/femsyr/foab051[details]
Wang, M-M., Groenewald, M., Wu, F., Guo, Y-T., Wang, Q-M., & Boekhout, T. (2021). Intraspecific nucleotide divergence in Saccharomycodes ludwigii, and proposal of Saccharomycodes pseudoludwigii sp. nov, a new apiculate yeast isolated from China. Antonie van Leeuwenhoek, 114(5), 553-559. https://doi.org/10.1007/s10482-021-01540-8
Yurkov, A., Alves, A., Bai, F-Y., Boundy-Mills, K., Buzzini, P., Čadež, N., Cardinali, G., Casaregola, S., Chaturvedi, V., Collin, V., Fell, J. W., Girard, V., Groenewald, M., Hagen, F., Hittinger, C. T., Kachalkin, A. V., Kostrzewa, M., Kouvelis, V., Libkind, D., ... Boekhout, T. (2021). Nomenclatural issues concerning cultured yeasts and other fungi: why it is important to avoid unneeded name changes. IMA Fungus, 12, [18]. https://doi.org/10.1186/s43008-021-00067-x[details]
Zeghal, E., Vaksmaa, A., Vielfaure, H., Boekhout, T., & Niemann, H. (2021). The Potential Role of Marine Fungi in Plastic Degradation – A Review. Frontiers in Marine Science, 8, [738877]. https://doi.org/10.3389/fmars.2021.738877[details]
Arastehfar, A., Daneshnia, F., Hafez, A., Khodavaisy, S., Najafzadeh, M-J., Charsizadeh, A., Zarrinfar, H., Salehi, M., Zare Shahrabadi, Z., Sasani, E., Zomorodian, K., Pan, W., Hagen, F., Ilkit, M., Kostrzewa, M., & Boekhout, T. (2020). Antifungal susceptibility, genotyping, resistance mechanism, and clinical profile of Candida tropicalis blood isolates. Medical Mycology, 58(6), 766–773. https://doi.org/10.1093/mmy/myz124[details]
Arastehfar, A., Daneshnia, F., Hilmioğlu-Polat, S., Fang, W., Yaşar, M., Polat, F., Metin, D. Y., Rigole, P., Coenye, T., Ilkit, M., Pan, W., Liao, W., Hagen, F., Kostrzewa, M., Perlin, D. S., Lass-Flörl, C., & Boekhout, T. (2020). First Report of Candidemia Clonal Outbreak Caused by Emerging Fluconazole-Resistant Candida parapsilosis Isolates Harboring Y132F and/or Y132F+K143R in Turkey. Antimicrobial Agents and Chemotherapy, 64(10), [e01001-20]. https://doi.org/10.1128/AAC.01001-20[details]
Arastehfar, A., Daneshnia, F., Najafzadeh, M. J., Hagen, F., Mahmoudi, S., Salehi, M., Zarrinfar, H., Namvar, Z., Zareshahrabadi, Z., Khodavaisy, S., Zomorodian, K., Pan, W., Theelen, B., Kostrzewa, M., Boekhout, T., & Lass-Flörl, C. (2020). Evaluation of Molecular Epidemiology, Clinical Characteristics, Antifungal Susceptibility Profiles, and Molecular Mechanisms of Antifungal Resistance of Iranian Candida parapsilosis Species Complex Blood Isolates. Frontiers in Cellular and Infection Microbiology, 10, [206]. https://doi.org/10.3389/fcimb.2020.00206[details]
Arastehfar, A., Lass-Flörl, C., Garcia-Rubio, R., Daneshnia, F., Ilkit, M., Boekhout, T., Gabaldon, T., & Perlin, D. S. (2020). The Quiet and Underappreciated Rise of Drug-Resistant Invasive Fungal Pathogens. Journal of Fungi, 6(3), [138]. https://doi.org/10.3390/jof6030138[details]
Arastehfar, A., Lim, W., Daneshnia, F., van de Sande, W. W. J., Fahal, A. H., Desnos-Ollivier, M., de Hoog, G. S., Boekhout, T., & Ahmed, S. A. (2020). Madurella real-time PCR, a novel approach for eumycetoma diagnosis. PLoS Neglected Tropical Diseases, 14(1), [e0007845]. https://doi.org/10.1371/journal.pntd.0007845[details]
Chen, M., Hong, N., Hu, S., Wang, P., Guan, H., Xiao, M., Zhu, X., Al-Hatmi, A. M. S., Zhou, Z., Gao, L., Boekhout, T., Xu, J., Xu, Y., Liao, W., & Yang, Y. (2020). Molecular identification of Cryptococcus gattii from cerebrospinal fluid using single-cell sequencing: A case study. Journal of Infection, 81(4), 634-638. https://doi.org/10.1016/j.jinf.2020.06.040[details]
El-Samawaty, AEA., Boekhout, T., Yassin, M. A., & Abdel-Wahab, M. A. (2020). Saturnispora mangrovi f.a., sp. nov. from Syhat mangrove, Saudi Arabia. International Journal of Systematic and Evolutionary Microbiology, 70(2), 977-981. https://doi.org/10.1099/ijsem.0.003859[details]
Hernández-Cervantes, A., Znaidi, S., van Wijlick, L., Denega, I., Basso, V., Ropars, J., Sertour, N., Sullivan, D., Moran, G., Basmaciyan, L., Bon, F., Dalle, F., Bougnoux, M-E., Boekhout, T., Yang, Y., Li, Z., Bachellier-Bassi, S., & d'Enfert, C. (2020). A conserved regulator controls asexual sporulation in the fungal pathogen Candida albicans. Nature Communications, 11, [6224]. https://doi.org/10.1038/s41467-020-20010-9[details]
Kord, M., Salehi, M., Khodavaisy, S., Hashemi, S. J., Daie Ghazvini, R., Rezaei, S., Maleki, A., Elmimoghaddam, A., Alijani, N., Abdollahi, A., Doomanlou, M., Ahmadikia, K., Rashidi, N., Pan, W., Boekhout, T., & Arastehfar, A. (2020). Epidemiology of yeast species causing bloodstream infection in Tehran, Iran (2015-2017); superiority of 21-plex PCR over the Vitek 2 system for yeast identification. Journal of Medical Microbiology, 69(5), 712-720. https://doi.org/10.1099/jmm.0.001189[details]
Megri, Y., Arastehfar, A., Boekhout, T., Daneshnia, F., Hörtnagl, C., Sartori, B., Hafez, A., Pan, W., Lass-Flörl, C., & Hamrioui, B. (2020). Candida tropicalis is the most prevalent yeast species causing candidemia in Algeria: The urgent need for antifungal stewardship and infection control measures. Antimicrobial Resistance & Infection Control, 9, [50]. https://doi.org/10.1186/s13756-020-00710-z[details]
Rhimi, W., Aneke, C. I., Annoscia, G., Otranto, D., Boekhout, T., & Cafarchia, C. (2020). Effect of chlorogenic and gallic acids combined with azoles on antifungal susceptibility and virulence of multidrug-resistant Candida spp. and Malassezia furfur isolates. Medical Mycology, 58(8), 1091-1101. https://doi.org/10.1093/mmy/myaa010[details]
Rhimi, W., Theelen, B., Boekhout, T., Otranto, D., & Cafarchia, C. (2020). Malassezia spp. Yeasts of Emerging Concern in Fungemia. Frontiers in Cellular and Infection Microbiology, 10, [370]. https://doi.org/10.3389/fcimb.2020.00370[details]
Salehi, M., Ahmadikia, K., Mahmoudi, S., Kalantari, S., Jamalimoghadamsiahkali, S., Izadi, A., Kord, M., Dehghan Manshadi, S. A., Seifi, A., Ghiasvand, F., Khajavirad, N., Ebrahimi, S., Koohfar, A., Boekhout, T., & Khodavaisy, S. (2020). Oropharyngeal candidiasis in hospitalised COVID-19 patients from Iran. Mycoses, 63(8), 771-778. https://doi.org/10.1111/myc.13137[details]
Stavrou, A. A., Pérez-Hansen, A., Lackner, M., Lass-Flörl, C., & Boekhout, T. (2020). Elevated minimum inhibitory concentrations to antifungal drugs prevail in 14 rare species of candidemia-causing Saccharomycotina yeasts. Medical Mycology, 58(7), 987-995. https://doi.org/10.1093/mmy/myaa005[details]
Toplis, B., Bosch, C., Schwartz, I. S., Kenyon, C., Boekhout, T., Perfect, J. R., & Botha, A. (2020). The virulence factor urease and its unexplored role in the metabolism of Cryptococcus neoformans. FEMS Yeast Research, 20(4), [foaa031]. https://doi.org/10.1093/femsyr/foaa031[details]
Vatanshenassan, M., Boekhout, T., Mauder, N., Robert, V., Maier, T., Meis, J. F., Berman, J., Then, E., Kostrzewa, M., & Hagen, F. (2020). Evaluation of Microsatellite Typing, ITS Sequencing, AFLP Fingerprinting, MALDI-TOF MS, and Fourier-Transform Infrared Spectroscopy Analysis of Candida auris. Journal of Fungi, 6(3), [146]. https://doi.org/10.3390/jof6030146[details]
Arastehfar, A., Bakhtiari, M., Daneshnia, F., Fang, W., Sadati, S. K., Al-Hatmi, A. M. S., ... Boekhout, T. (2019). First fungemia case due to environmental yeast Wickerhamomyces myanmarensis: detection by multiplex qPCR and antifungal susceptibility. Future Microbiology, 14(4), 267-274. https://doi.org/10.2217/fmb-2018-0253[details]
Arastehfar, A., Daneshnia, F., Farahyar, S., Fang, W., Salimi, M., Salehi, M., ... Boekhout, T. (2019). Incidence and spectrum of yeast species isolated from the oral cavity of Iranian patients suffering from hematological malignancies. Journal of Oral Microbiology, 11(1), [1601061]. https://doi.org/10.1080/20002297.2019.1601061[details]
Arastehfar, A., Daneshnia, F., Kord, M., Roudbary, M., Zarrinfar, H., Fang, W., ... Boekhout, T. (2019). Comparison of 21-Plex PCR and API 20C AUX, MALDI-TOF MS, and rDNA Sequencing for a Wide Range of Clinically Isolated Yeast Species: Improved Identification by Combining 21-Plex PCR and API 20C AUX as an Alternative Strategy for Developing Countries. Frontiers in Cellular and Infection Microbiology, 9, [21]. https://doi.org/10.3389/fcimb.2019.00021[details]
Arastehfar, A., Daneshnia, F., Kord, M., Roudbary, M., Zarrinfar, H., Fang, W., ... Boekhout, T. (2019). Corrigendum: Comparison of 21-Plex PCR and API 20C AUX, MALDI-TOF MS, and rDNA Sequencing for a Wide Range of Clinically Isolated Yeast Species: Improved Identification by Combining 21-Plex PCR and API 20C AUX as an Alternative Strategy for Developing Countries. Frontiers in Cellular and Infection Microbiology, 9, [176]. https://doi.org/10.3389/fcimb.2019.00176
Arastehfar, A., Daneshnia, F., Salehi, M-R., Zarrinfar, H., Khodavaisy, S., Haas, P-J., Roudbary, M., Najafzadeh, M-J., Zomorodian, K., Charsizadeh, A., Brouwer, C., Pan, W., Hagen, F., & Boekhout, T. (2019). Corrigendum: Molecular characterization and antifungal susceptibility testing of Candida nivariensis from blood samples – an Iranian multicentre study and a review of the literature. Journal of Medical Microbiology, 68(11), 1695. https://doi.org/10.1099/jmm.0.001075
Arastehfar, A., Daneshnia, F., Salehi, M. R., Zarrinfar, H., Khodavaisy, S., Haas, P-J., Roudbary, M., Najafzadeh, M-J., Zomorodian, K., Charsizadeh, A., Brouwer, C., Pan, W., Hagen, F., & Boekhout, T. (2019). Molecular characterization and antifungal susceptibilitytesting of Candida nivariensis from blood samples – an Iranian multicentre study and a review of the literature. Journal of Medical Microbiology, 68(5), 770-777. https://doi.org/10.1099/jmm.0.000963[details]
Arastehfar, A., Daneshnia, F., Zomorodian, K., Najafzadeh, M. J., Khodavaisy, S., Zarrinfar, H., Hagen, F., Zare Shahrabadi, Z., Lackner, M., Mirhendi, H., Salehi, M., Roudbary, M., Pan, W., Kostrzewa, M., & Boekhout, T. (2019). Low level of antifungal resistance in Iranian isolates of Candida glabrata recovered from blood samples in a multicenter study from 2015 to 2018 and potential prognostic values of genotyping and sequencing of PDR1. Antimicrobial Agents and Chemotherapy, 63(7), [e02503-18]. https://doi.org/10.1128/AAC.02503-18[details]
Arastehfar, A., Fang, W., Al-Hatmi, A. M. S., Afsarian, M. H., Daneshnia, F., Bakhtiari, M., ... Boekhout, T. (2019). Corrigendum: Unequivocal identification of an underestimated opportunistic yeast species, Cyberlindnera fabianii, and its close relatives using a dual-function PCR and literature review of published cases. Medical Mycology, 57(8), [e12]. https://doi.org/10.1093/mmy/myz025
Arastehfar, A., Fang, W., Al-Hatmi, A. M. S., Afsarian, M. H., Daneshnia, F., Bakhtiari, M., ... Boekhout, T. (2019). Unequivocal identification of an underestimated opportunistic yeast species, Cyberlindnera fabianii, and its close relatives using a dual-function PCR and literature review of published cases. Medical Mycology, 57(7), 833–840. https://doi.org/10.1093/mmy/myy148[details]
Arastehfar, A., Fang, W., Daneshnia, F., Al-Hatmi, A. M. S., Liao, W., Pan, W., ... Boekhout, T. (2019). Novel multiplex real-time quantitative PCR detecting system approach for direct detection of Candida auris and its relatives in spiked serum samples. Future Microbiology, 14(1), 33-45. https://doi.org/10.2217/fmb-2018-0227[details]
Arastehfar, A., Fang, W., Pan, W., Lackner, M., Liao, W., Badiee, P., ... Boekhout, T. (2019). YEAST PANEL multiplex PCR for identification of clinically important yeast species. Diagnostic Microbiology and Infectious Disease, 93(2), 112-119. https://doi.org/10.1016/j.diagmicrobio.2018.09.007[details]
Arastehfar, A., Khodavaisy, S., Daneshnia, F., Najafzadeh, M-J., Mahmoudi, S., Charsizadeh, A., ... Boekhout, T. (2019). Molecular Identification, Genotypic Diversity, Antifungal Susceptibility, and Clinical Outcomes of Infections Caused by Clinically Underrated Yeasts, Candida orthopsilosis, and Candida metapsilosis: An Iranian Multicenter Study (2014–2019). Frontiers in Cellular and Infection Microbiology, 9, [264]. https://doi.org/10.3389/fcimb.2019.00264[details]
Arastehfar, A., Wickes, B. L., Ilkit, M., Pincus, D. H., Daneshnia, F., Pan, W., ... Boekhout, T. (2019). Identification of Mycoses in Developing Countries. Journal of Fungi, 5(4), [90]. https://doi.org/10.3390/jof5040090[details]
Cogliati, M., Desnos-Ollivier, M., McCormick-Smith, I., Rickerts, V., Ferreira-Paim, K., Meyer, W., ... Lockhart, S. R. (2019). Genotypes and population genetics of cryptococcus neoformans and cryptococcus gattii species complexes in Europe and the mediterranean area. Fungal Genetics and Biology, 129, 16-29. https://doi.org/10.1016/j.fgb.2019.04.001[details]
Crous, P. W., Carnegie, A. J., Wingfield, M. J., Sharma, R., Mughini, G., Noordeloos, M. E., Santini, A., Shouche, Y. S., Bezerra, J. D. P., Dima, B., Guarnaccia, V., Imrefi, I., Jurjević, Knapp, D. G., Kovács, G. M., Magistà, D., Perrone, G., Rämä, T., Rebriev, Y. A., ... Groenewald, J. Z. (2019). Fungal planet description sheets: 868-950. Persoonia: Molecular Phylogeny and Evolution of Fungi, 42, 291-473. https://doi.org/10.3767/persoonia.2019.42.11
Fotedar, R., Fell, J. W., Boekhout, T., Kolecka, A., Zeyara, A., Kaul, R., ... Al Marri, M. (2019). Cystobasidium halotolerans sp. nov., a novel basidiomycetous yeast species isolated from the Arabian Gulf. International Journal of Systematic and Evolutionary Microbiology, 69(3), 839-845. https://doi.org/10.1099/ijsem.0.003250[details]
Fotedar, R., Kolecka, A., Boekhout, T., Fell, J. W., Anand, A., Al Malaki, A., ... Al Marri, M. (2019). Corrigendum: Naganishia qatarensis sp. nov., a novel basidiomycetous yeast species from a hypersaline marine environment in Qatar. International Journal of Systematic and Evolutionary Microbiology, 69(3), 873. https://doi.org/10.1099/ijsem.0.003257
Fotedar, R., Kolecka, A., Boekhout, T., Fell, J. W., Zeyara, A., Al Malki, A., & Al Marri, M. (2019). Kondoa qatarensis f.a., sp. nov., a novel yeast species isolated from marine water in Qatar. International Journal of Systematic and Evolutionary Microbiology, 69(2), 486–492. https://doi.org/10.1099/ijsem.0.003182[details]
Fotedar, R., Sandoval-Denis, M., Kolecka, A., Zeyara, A., Al Malki, A., Al Shammari, H., ... Boekhout, T. (2019). Toxicocladosporium aquimarinum sp. nov. and Toxicocladosporium qatarense sp. nov., isolated from marine waters of the Arabian Gulf surrounding Qatar. International Journal of Systematic and Evolutionary Microbiology, 69(10), 2992-3000. https://doi.org/10.1099/ijsem.0.003482[details]
Hoeksma, J., Misset, T., Wever, C., Kemmink, J., Kruijtzer, J., Versluis, K., ... den Hertog, J. (2019). A new perspective on fungal metabolites: identification of bioactive compounds from fungi using zebrafish embryogenesis as read-out. Scientific Reports, 9, [17546]. https://doi.org/10.1038/s41598-019-54127-9[details]
Hong, N., Chen, M., Xu, N., Al-Hatmi, A. M. S., Zhang, C., Pan, W. H., ... Liao, W. Q. (2019). Genotypic diversity and antifungal susceptibility of Cryptococcus neoformans isolates from paediatric patients in China. Mycoses, 62(2), 171-180. https://doi.org/10.1111/myc.12863[details]
Kortsinoglou, A. M., Korovesi, A. G., Theelen, B., Hagen, F., Boekhout, T., & Kouvelis, V. N. (2019). The mitochondrial intergenic regions nad1-cob and cob-rps3 as molecular identification tools for pathogenic members of the genus Cryptococcus. FEMS Yeast Research, 19(8), [foz077]. https://doi.org/10.1093/femsyr/foz077[details]
Mixão, V., Perez Hansen, A., Saus, E., Boekhout, T., Lass-Florl, C., & Gabaldón, T. (2019). Whole-Genome Sequencing of the Opportunistic Yeast Pathogen Candida inconspicua Uncovers Its Hybrid Origin. Frontiers in Genetics, 10, [383]. https://doi.org/10.3389/fgene.2019.00383[details]
Richter, C., Yurkov, A. M., Boekhout, T., & Stadler, M. (2019). Diversity of Tilletiopsis-Like Fungi in Exobasidiomycetes (Ustilaginomycotina) and Description of Six Novel Species. Frontiers in Microbiology, 10, [2544]. https://doi.org/10.3389/fmicb.2019.02544[details]
Salah, H., Lackner, M., Houbraken, J., Theelen, B., Lass-Flörl, C., Boekhout, T., ... Taj-Aldeen, S. J. (2019). The Emergence of Rare Clinical Aspergillus Species in Qatar: Molecular Characterization and Antifungal Susceptibility Profiles. Frontiers in Microbiology, 10, [1677]. https://doi.org/10.3389/fmicb.2019.01677[details]
Stavrou, A. A., Lackner, M., Lass-Flörl, C., & Boekhout, T. (2019). The changing spectrum of Saccharomycotina yeasts causing candidemia: phylogeny mirrors antifungal susceptibility patterns for azole drugs and amphothericin B. FEMS Yeast Research, 19(4), [foz037]. https://doi.org/10.1093/femsyr/foz037[details]
Theelen, B., Cafarchia, C., Gaitanis, G., Bassukas, I. D., Boekhout, T., & Dawson, Jr, T. L. (2019). Corrigendum: Malassezia ecology, pathophysiology, and treatment. Medical Mycology, 57(3), e2. https://doi.org/10.1093/mmy/myy046
Vatanshenassan, M., Arastehfar, A., Boekhout, T., Berman, J., Lass-Flörl, C., Sparbier, K., & Kostrzewa, M. (2019). Anidulafungin Susceptibility Testing of Candida glabrata Isolates from Blood Cultures by the MALDI Biotyper Antibiotic (Antifungal) Susceptibility Test Rapid Assay. Antimicrobial Agents and Chemotherapy, 63(9), [e00554-19]. https://doi.org/10.1128/AAC.00554-19[details]
Vatanshenassan, M., Boekhout, T., Meis, J. F., Berman, J., Chowdhary, A., Ben-Ami, R., ... Kostrzewa, M. (2019). Candida auris Identification and Rapid Antifungal Susceptibility Testing Against Echinocandins by MALDI-TOF MS. Frontiers in Cellular and Infection Microbiology, 9, [20]. https://doi.org/10.3389/fcimb.2019.00020[details]
Vu, D., Groenewald, M., de Vries, M., Gehrmann, T., Stielow, B., Eberhardt, U., ... Verkley, G. J. M. (2019). Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher taxon delimitation. Studies in Mycology, 92, 135-154. https://doi.org/10.1016/j.simyco.2018.05.001[details]
Zhang, Q., Li, H., Zhang, K., Arastehfar, A., Daneshnia, F., Fang, W., ... Pan, W. (2019). Lumbar drainage for the treatment of refractory intracranial hypertension in HIV-negative cryptococcal meningitis. Future Microbiology, 14(10), 859-866. https://doi.org/10.2217/fmb-2019-0084[details]
2018
Arastehfar, A., Fang, W., Badali, H., Vaezi, A., Jiang, W., Liao, W., ... Boekhout, T. (2018). Low-Cost Tetraplex PCR for the Global Spreading Multi-Drug Resistant Fungus, Candida auris and Its Phylogenetic Relatives. Frontiers in Microbiology, 9, [1119]. https://doi.org/10.3389/fmicb.2018.01119[details]
Arastehfar, A., Fang, W., Pan, W., Liao, W., Yan, L., & Boekhout, T. (2018). Identification of nine cryptic species of Candida albicans, C. glabrata, and C. parapsilosis complexes using one-step multiplex PCR. BMC Infectious Diseases, 18, [480]. https://doi.org/10.1186/s12879-018-3381-5[details]
Aslani, N., Janbabaei, G., Abastabar, M., Meis, J. F., Babaeian, M., Khodavaisy, S., ... Badali, H. (2018). Identification of uncommon oral yeasts from cancer patients by MALDI-TOF mass spectrometry. BMC Infectious Diseases, 18, [24]. https://doi.org/10.1186/s12879-017-2916-5[details]
Boekhout, T. (2018). Cletus P. Kurtzman (1938-2017) - father of modern yeast taxonomy. IMA Fungus, 9(1), 11-12. [details]
Fotedar, R., Kolecka, A., Boekhout, T., Fell, J. W., Al-Malki, A., Zeyara, A., & Al Marri, M. (2018). Fungal diversity of the hypersaline Inland Sea in Qatar. Botanica Marina, 61(6), 595-609. https://doi.org/10.1515/bot-2018-0048[details]
Fotedar, R., Kolecka, A., Boekhout, T., Fell, J. W., Anand, A., Al Malaki, A., ... Al Marri, M. (2018). Naganishia qatarensis sp. nov., a novel basidiomycetous yeast species from a hypersaline marine environment in Qatar. International Journal of Systematic and Evolutionary Microbiology, 68(9), 2924-2929. https://doi.org/10.1099/ijsem.0.002920[details]
Gutiérrez, A., Boekhout, T., Gojkovic, Z., & Katz, M. (2018). Evaluation of non-Saccharomyces yeasts in the fermentation of wine, beer and cider for the development of new beverages. Journal of the Institute of Brewing, 124(4), 389-402. https://doi.org/10.1002/jib.512[details]
Hyde, K. D., Al-Hatmi, A. M. S., Andersen, B., Boekhout, T., Buzina, W., Dawson Jr., T. L., ... Tsui, C. K. M. (2018). The world's ten most feared fungi. Fungal Diversity, 93(1), 161-194. https://doi.org/10.1007/s13225-018-0413-9[details]
Iatta, R., Battista, M., Miragliotta, G., Boekhout, T., Otranto, D., & Cafarchia, C. (2018). Blood culture procedures and diagnosis of Malassezia furfur bloodstream infections: Strength and weakness. Medical Mycology, 56(7), 828-833. https://doi.org/10.1093/mmy/myx122[details]
Khayhan, K., Juntaboon, S., Fang, W., Chaowasku, T., Amornthipayawong, D., & Boekhout, T. (2018). Banana blossom agar (BABA), a new medium to isolate members of the Cryptococcus neoformans/Cryptococcus gattii species complex useful for resource limited countries. Mycoses, 61(12), 959-962. https://doi.org/10.1111/myc.12833[details]
Liu, X-Z., Groenewald, M., Boekhout, T., & Bai, F-Y. (2018). Kondoa gutianensis f.a. sp. nov., a novel ballistoconidium-forming yeast species isolated from plant leaves. Antonie van Leeuwenhoek, 111(1), 155-160. https://doi.org/10.1007/s10482-017-0936-1[details]
Quintilla, R., Kolecka, A., Casaregola, S., Daniel, H. M., Houbraken, J., Kostrzewa, M., ... Groenewald, M. (2018). MALDI-TOF MS as a tool to identify foodborne yeasts and yeast-like fungi. International Journal of Food Microbiology, 266, 109-118. https://doi.org/10.1016/j.ijfoodmicro.2017.11.016[details]
Ravasio, D., Carlin, S., Boekhout, T., Groenewald, M., Vrhovsek, U., Walther, A., & Wendland, J. (2018). Adding Flavor to Beverages with Non-Conventional Yeasts. Fermentation, 4(1), [15]. https://doi.org/10.3390/fermentation4010015[details]
Shokohi, T., Aslani, N., Ahangarkani, F., Meyabadi, M. F., Hagen, F., Meis, J. F., ... Badali, H. (2018). Candida infanticola and Candida spencermartinsiae yeasts: Possible emerging species in cancer patients. Microbial Pathogenesis, 115, 353-357. https://doi.org/10.1016/j.micpath.2017.12.069[details]
Stavrou, A. A., Mixão, V., Boekhout, T., & Gabaldón, T. (2018). Misidentification of genome assemblies in public databases: The case of Naumovozyma dairenensis and proposal of a protocol to correct misidentifications. Yeast, 35(6), 425-429. https://doi.org/10.1002/yea.3303[details]
Theelen, B., Cafarchia, C., Gaitanis, G., Bassukas, I. D., Boekhout, T., & Dawson Jr., T. L. (2018). Malassezia ecology, pathophysiology, and treatment. Medical Mycology, 56(1, Supplement), S10-S25. https://doi.org/10.1093/mmy/myx134[details]
Vasco-Palacios, A. M., Hernandez, J., Peñuela-Mora, M. C., Franco-Molano, A. E., & Boekhout, T. (2018). Ectomycorrhizal fungi diversity in a white sand forest in western Amazonia. Fungal Ecology, 31, 9-18. https://doi.org/10.1016/j.funeco.2017.10.003[details]
Vatanshenassan, M., Boekhout, T., Lass-Flörl, C., Lackner, M., Schubert, S., Kostrzewa, M., & Sparbier, K. (2018). Proof of Concept for MBT ASTRA, a Rapid Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry (MALDI-TOF MS)-Based Method To Detect Caspofungin Resistance in Candida albicans and Candida glabrata. Journal of Clinical Microbiology, 56(9), [e00420-18]. https://doi.org/10.1128/JCM.00420-18[details]
Wu, L., McCluskey, K., Desmeth, P., Liu, S., Hideaki, S., Yin, Y., ... Ma, J. (2018). The global catalogue of microorganisms 10K type strain sequencing project: closing the genomic gaps for the validly published prokaryotic and fungi species. GigaScience, 7(5), [ giy026]. https://doi.org/10.1093/gigascience/giy026[details]
Zamora, J. C., Svensson, M., Kirschner, R., Olariaga, I., Ryman, S., Parra, L. A., Geml, J., Rosling, A., Adamčík, S., Ahti, T., Aime, M. C., Ainsworth, A. M., Albert, L., Albertó, E., García, A. A., Ageev, D., Agerer, R., Aguirre-Hudson, B., Ammirati, J., ... Ekman, S. (2018). Considerations and consequences of allowing DNA sequence data as types of fungal taxa. IMA Fungus, 9(1), 167-175. https://doi.org/10.5598/imafungus.2018.09.01.10
de Hoog, S., Monod, M., Dawson, T., Boekhout, T., Mayser, P., & Graeser, Y. (2018). Skin Fungi from Colonization to Infection. In The fungal kingdom ASM Press. https://doi.org/10.1128/microbiolspec.FUNK-0049-2016
van Donselaar, E. G., Dorresteijn, B., Popov-Čeleketić, D., van de Wetering, W. J., Verrips, T. C., Boekhout, T., ... Müller, W. H. (2018). Extremely thin layer plastification for focused‐ion beam scanning electron microscopy: an improved method to study cell surfaces and organelles of cultured cells. Journal of Microscopy, 270(3), 359-373. https://doi.org/10.1111/jmi.12694[details]
van der Bruggen, T., Kolecka, A., Theelen, B., Kwakkel-van Erp, J. M., Arets, B., & Boekhout, T. (2018). Cutaneotrichosporon (Cryptococcus) cyanovorans, a basidiomycetous yeast, isolated from the airways of cystic fibrosis patients. MEDICAL MYCOLOGY CASE REPORTS, 22, 18-20. https://doi.org/10.1016/j.mmcr.2018.07.008[details]
Badiee, P., Badali, H., Boekhout, T., Diba, K., Moghadam, A. G., Hossaini Nasab, A., ... Soltani, J. (2017). Antifungal susceptibility testing of Candida species isolated from the immunocompromised patients admitted to ten university hospitals in Iran. BMC Infectious Diseases, 17, [727]. https://doi.org/10.1186/s12879-017-2825-7[details]
Ben Hassine Ben Ali, M., Boekhout, T., & Thorn, G. (2017). Assemblages of fungi associated with cork oak forests in northwestern Tunisia. Nova Hedwigia, 105(1-2), 121-134. https://doi.org/10.1127/nova_hedwigia/2016/0378[details]
Boekhout, T., & Dijksterhuis, J. (2017). Fungi for food and drinks. In J. van Doorn, J. Luirink, J. van der Oost, B. Oudega, L. Robertson, H. Smit, P. Willemsen, ... C. Biemans (Eds.), Mighty Microbes: The amazing world of microorganisms (pp. 79-80). Castricum: Stichting Microcanon.
Boekhout, T., Bracharz, F., Mehlmer, N., & Brueck, T. (2017). Opportunities and challenges in the development of Cutaneotrichosporon oleaginosus ATCC 20509 as a new cell factory for custom tailored microbial oils. Microbial Cell Factories, 16. https://doi.org/10.1186/s12934-017-0791-9
Botschuijver, S., Roeselers, G., Levin, E., Jonkers, D. M., Welting, O., Heinsbroek, S., de Weerd, H. H., Boekhout, T., Fornai, M., Masclee, A. A., Schuren, F. H. J., de Jonge, W. J., Seppen, J., & van den Wijngaard, R. M. (2017). Intestinal Fungal Dysbiosis Associated With Visceral Hypersensitivity in Patients With Irritable Bowel Syndrome and Rats. Gastroenterology, 153(4), 1026-1039. https://doi.org/10.1053/j.gastro.2017.06.004[details]
Cogliati, M., Puccianti, E., Montagna, M. T., De Donno, A., Susever, S., Ergin, C., Velegraki, A., Ellabib, M. S., Nardoni, S., Macci, C., Trovato, L., Dipineto, L., Rickerts, V., Akcaglar, S., Mlinaric-Missoni, E., Bertout, S., Venca, A. C. F., Sampaio, A. C., Criseo, G., ... Colom, M. F. (2017). Fundamental niche prediction of the pathogenicyeastsCryptococcus neoformans and Cryptococcus gattii in Europe. Environmental Microbiology, 19(10), 4318-4325. https://doi.org/10.1111/1462-2920.13915[details]
Fang, W., Zhang, L., Liu, J., Denning, D. W., Hagen, F., Jiang, W-W., ... Pan, W. (2017). Tuberculosis/cryptococcosis co-infection in China between 1965 and 2016. Emerging Microbes & Infections, 6, e73. https://doi.org/10.1038/emi.2017.61[details]
Ferreira-Paim, K., Andrade-Silva, L., Fonseca, F., Ferreira, T., Mora, D., Andrade-Silva, J., Khan, A., Dao, A., C. Reis, E., Almeida, M., Maltos, A., Rodrigues Jr, V., Trilles, L., Rickerts, V., Chindamporn, A., Sykes, J., Cogliati, M., Nielsen, K., Boekhout, T., & Silva-Vergara, M. L. (2017). MLST-Based Population Genetic Analysis in a Global Context Reveals Clonality amongst Cryptococcus neoformans var. grubii VNI Isolates from HIV Patients in Southeastern Brazil. PLoS Neglected Tropical Diseases, 11, [e0005223]. https://doi.org/10.1371/journal.pntd.0005223
Hong, N., Chen, M., Fang, W., Al-Hatmi, A. M. S., Boekhout, T., Xu, J., ... Liao, W. (2017). Cryptococcosis in HIV-negative Patients with Renal Dialysis: A Retrospective Analysis of Pooled Cases. Mycopathologia, 182(9-10), 887-896. https://doi.org/10.1007/s11046-017-0163-3[details]
Hudson, L. N., Newbold, T., Contu, S., Hill, S. L. L., Lysenko, I., De Palma, A., Phillips, H. R. P., Alhusseini, T. I., Bedford, F. E., Bennett, D. J., Booth, H., Burton, V. J., Chng, C. W. T., Choimes, A., Correia, D. L. P., Day, J., Echeverría-Londoño, S., Emerson, S. R., Gao, D., ... Purvis, A. (2017). The database of the PREDICTS (Projecting Responses of Ecological Diversity In Changing Terrestrial Systems) project. Ecology and Evolution, 7(1), 145-188. https://doi.org/10.1002/ece3.2579
Khayhan, K., Hagen, F., Norkaew, T., Puengchan, T., Boekhout, T., & Sriburee, P. (2017). Isolation of Cryptococcus gattii from a Castanopsis argyrophylla tree hollow (Mai-Kaw), Chiang Mai, Thailand. Mycopathologia, 182(3-4), 365-370. https://doi.org/10.1007/s11046-016-0067-7[details]
Krisai-Greilhuber, I., Chen, Y., Jabeen, S., Madrid, H., Marincowitz, S., Razaq, A., ... Yu, J-Y. (2017). Fungal Systematics and Evolution: FUSE 3. Sydowia, 69, 229-264.
Kurtzman, C. P., & Boekhout, T. (2017). Yeasts as Distinct Life Forms of Fungi. In P. Buzzini, M-A. Lachance, & A. Yurkov (Eds.), Yeasts in Natural Ecosystems: Ecology (pp. 1-37). Cham: Springer. https://doi.org/10.1007/978-3-319-61575-2_1[details]
Li, Y., Fang, W., Jiang, W., Hagen, F., Liu, J., Zhang, L., ... Pan, W. (2017). Cryptococcosis in patients with diabetes mellitus II in mainland China: 1993‐2015. Mycoses, 60(11), 706-713. https://doi.org/10.1111/myc.12645[details]
Liu, X-Z., Groenewald, M., Boekhout, T., & Bai, F-Y. (2017). Heitmania gen. nov., a new yeast genus in Microbotryomycetes, and description of three novel species: Heitmania litseae sp. nov., Heitmania castanopsis sp. nov. and Heitmania elacocarpi sp. nov. International Journal of Systematic and Evolutionary Microbiology, 67(11), 4534-4540. https://doi.org/10.1099/ijsem.0.002323[details]
Nguyen, H-V., & Boekhout, T. (2017). Characterization of Saccharomyces uvarum (Beijerinck, 1898) and related hybrids: assessment of molecular markers that predict the parent and hybrid genomes and a proposal to name yeast hybrids. FEMS Yeast Research, 17(2), [fox014]. https://doi.org/10.1093/femsyr/fox014[details]
Sun, S., Yadav, V., Billmyre, R. B., Cuomo, C. A., Nowrousian, M., Wang, L., ... Heitman, J. (2017). Fungal genome and mating system transitions facilitated by chromosomal translocations involving intercentromeric recombination. PLoS Biology, 15(8), [e2002527]. https://doi.org/10.1371/journal.pbio.2002527[details]
Taj-Aldeen, S. J., Almaslamani, M., Theelen, B. J. F., & Boekhout, T. (2017). Phylogenetic analysis reveals two genotypes of the emerging fungus Mucor indicus, an opportunistic human pathogen in immunocompromised patients. Emerging Microbes & Infections, 6, [e63]. https://doi.org/10.1038/emi.2017.51[details]
Vaezi, A., Fakhim, H., Khodavaisy, S., Alizadeh, A., Nazeri, M., Soleimani, A., ... Badali, H. (2017). Epidemiological and mycological characteristics of candidemia in Iran. Journal de Mycologie Medicale, 27(2), 146-152. https://doi.org/10.1016/j.mycmed.2017.02.007[details]
Vreulink, J-M., Khayhan, K., Hagen, F., Botes, A., Moller, L., Boekhout, T., ... Botha, A. (2017). Presence of pathogenic cryptococci on trees situated in two recreational areas in South Africa. Fungal Ecology, 30, 101-111. https://doi.org/10.1016/j.funeco.2017.09.005
Zhou, N., Schifferdecker, A-J., Gamero, A., Compagno, C., Boekhout, T., Piškur, J., & Knecht, W. (2017). Kazachstania gamospora and Wickerhamomyces subpelliculosus: Two alternative baker’s yeasts in the modern bakery. International Journal of Food Microbiology, 250, 45-58. https://doi.org/10.1016/j.ijfoodmicro.2017.03.013[details]
Zhu, Y., Engström, P. G., Tellgren-Roth, C., Baudo, C. D., Kennell, J. C., Sun, S., ... Lehtiö, J. (2017). Proteogenomics produces comprehensive and highly accurate protein-coding gene annotation in a complete genome assembly of Malassezia sympodialis. Nucleic Acids Research, 45(5), 2629-2643. https://doi.org/10.1093/nar/gkx006[details]
Boekhout, T., Gueidan, C., de Hoog, S., Samson, R., Varga, J., & Walther, G. (2009). Fungal taxonomy: New developments in medically important fungi. Current Fungal Infection Reports, 3(3), 170-178. https://doi.org/10.1007/s12281-009-0022-x[details]
Botschuijver, S., Roeselers, G., Levin, E., Jonkers, D., Welting, O., Heinsbroek, S., de Weerd, H. H., Boekhout, T., Fornai, M., Masclee, A., de Jonge, W., Seppen, J., & van den Wijngaard, R. M. (2017). Fecal Transplantation and Mycobiome Analysis Showing the Relevance of Fungi in Post Stress Visceral Hypersensitivity of Maternal Separated Rats. Gastroenterology, 152(5, Supplement 1), S160. [732]. https://doi.org/10.1016/S0016-5085(17)30856-9[details]
2017
Boekhout, T. (2017). Theatrum Fungorum: Van Campernoelje en Kleine Deeltjens. (Oratiereeks; No. 583). Universiteit van Amsterdam. [details]
Chapter 4: Combinatory use of human lactoferrin 1-11 [hLF(1-11)] and fluconazole or anidulafungin against clinically important Candida spp. reveal an additive effect(embargo until 10 February 2024)
Chapter 5: A novel treatment-focused multiplex TaqMan-based qPCR for the detection of 25 candidemia-associated Candida species(embargo until 10 February 2024)
Chapter 6: A TaqMan-based qPCR for the detection of Malassezia spp.(embargo until 10 February 2024)
Chapter 7: Genetic and phenotypical diversity of fecal Candida albicans strains in irritable bowel syndrome(embargo until 10 February 2024)
Vatanshenassan, M. (2020). New methods for the rapid identification and antifungal susceptibility testing of clinically important Candida species. [details]
Arastehfar, A. (2019). Development of fungal identification tools and evaluation of microbiological and clinical profiles of Candida species from Iran. [details]
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