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Prof. dr. T. (Teun) Boekhout

Special Chair of Fungal Functional Diversity
Faculteit der Natuurwetenschappen, Wiskunde en Informatica
Institute for Biodiversity and Ecosystem Dynamics
Bezoekadres
  • Science Park 904
Postadres
  • Postbus 94240
    1090 GE Amsterdam
Contactgegevens
  • Publicaties

    2021

    • Arastehfar, A., Daneshnia, F., Hilmioglu-Polat, S., Ilkit, M., Yasar, M., Polat, F., Metin, D. Y., Dokumcu, Ü. Z., Pan, W., Hagen, F., Boekhout, T., Perlin, D. S., & Lass-Flörl, C. (2021). Genetically related micafungin-resistant Candida parapsilosis blood isolates harbouring novel mutation R658G in hotspot 1 of Fks1p: a new challenge? Journal of Antimicrobial Chemotherapy, 76(2), 418–422. https://doi.org/10.1093/jac/dkaa419 [details]
    • Arastehfar, A., Khanjari, S., Zareshahrabadi, Z., Fang, W., Pan, W., Asadpour, E., Daneshnia, F., Ilkit, M., Boekhout, T., Perlin, D. S., Zand, F., & Zomorodian, K. (2021). Clinical and microbiological features of candiduria in critically ill adult patients in Shiraz, Iran (2016-2018): Deviations from international guidelines and fluconazole therapeutic failure. Medical Mycology, 59(6), 600–607. https://doi.org/10.1093/mmy/myaa092 [details]
    • Arastehfar, A., Yazdanpanah, S., Bakhtiari, M., Fang, W., Pan, W., Mahmoudi, S., Pakshir, K., Daneshnia, F., Boekhout, T., Ilkit, M., Perlin, D. S., Zomorodian, K., & Zand, F. (2021). Epidemiology of candidemia in Shiraz, southern Iran: A prospective multicenter study (2016–2018). Medical Mycology, 59(5), 422–430. https://doi.org/10.1093/mmy/myaa059 [details]
    • Arastehfar, A., de Almeida Júnior, J. N., Perlin, D. S., Ilkit, M., Boekhout, T., & Lopes Colombo, A. (2021). Multidrug-resistant Trichosporon species: underestimated fungal pathogens posing imminent threats in clinical settings. Critical Reviews in Microbiology, 47(6), 679-698. https://doi.org/10.1080/1040841X.2021.1921695 [details]
    • Boekhout, T., Aime, M. C., Begerow, D., Gabaldón, T., Heitman, J., Kemler, M., Khayhan, K., Lachance, M-A., Louis, E. J., Sun, S., Vu, D., & Yurkov, A. (2021). The evolving species concepts used for yeasts: from phenotypes and genomes to speciation networks. Fungal Diversity, 109, 27-55. https://doi.org/10.1007/s13225-021-00475-9 [details]
    • Boekhout, T., Amend, A. S., El Baidouri, F., Gabaldon, T., Geml, J., Mittelbach, M., Robert, V., Tan, C. S., Turchetti, B., Vu, D., Wang, Q-M., & Yurkov, A. (2021). Trends in yeast diversity discovery. Fungal Diversity. https://doi.org/10.1007/s13225-021-00494-6
    • Cao, B., Haelewaters, D., Schoutteten, N., Begerow, D., Boekhout, T., Giachini, A. J., Gorjon, S. P., Gunde-Cimerman, N., Hyde, K. D., Kemler, M., Li, G-J., Liu, D-M., Liu, X-Z., Nuytinck, J., Papp, V., Savchenko, A., Savchenko, K., Tedersoo, L., Theelen, B., ... Zhao, R-L. (2021). Delimiting species in Basidiomycota: a review. Fungal Diversity, 109(1), 181-237. https://doi.org/10.1007/s13225-021-00479-5 [details]
    • Crous, P. W., Cowan, D. A., Maggs‐Kölling, G., Yilmaz, N., Thangavel, R., Wingfield, M. J., Noordeloos, M. E., Dima, B., Brandrud, T. E., Jansen, G. M., Morozova, O. V., Vila, J., Shivas, R. G., Tan, Y. P., Bishop‐Hurley, S., Lacey, E., Marney, T. S., Larsson, E., Le Floch, G., ... Groenewald, J. Z. (2021). Fungal Planet description sheets: 1182–1283. Persoonia - Molecular Phylogeny and Evolution of Fungi, 46, 313-528. https://doi.org/10.3767/persoonia.2021.46.11
    • Crous, P. W., Lombard, L., Sandoval-Denis, M., Seifert, K. A., Schroers, H-J., Chaverri, P., Gené, J., Guarro, J., Hirooka, Y., Bensch, K., Kema, G. H. J., Lamprecht, S. C., Cai, L., Rossman, A. Y., Stadler, M., Summerbell, R. C., Taylor, J. W., Ploch, S., Visagie, C. M., ... Thines, M. (2021). Fusarium: more than a node or a foot-shaped basal cell. Studies in Mycology, 98, [100116]. https://doi.org/10.1016/j.simyco.2021.100116
    • Hafez, A., Futami, R., Arastehfar, A., Daneshnia, F., Miguel, A., Roig, F. J., Soriano, B., Perez-Sánchez, J., Boekhout, T., Gabaldón, T., & Llorens, C. (2021). SeqEditor: an application for primer design and sequence analysis with or without GTF/GFF files. Bioinformatics, 37(11), 1610–1612. https://doi.org/10.1093/bioinformatics/btaa903 [details]
    • Kord, M., Elmimoghaddam, A., Hashemi, S. J., Reziae, S., Daie Ghazvini, R., Salehi, M., Abdollahi, A., Ahmadi, A., Getso, M. I., Boekhout, T., & Khodavaisy, S. (2021). Comparison of PCR-RFLP with 21-plex PCR and rDNA Sequencing for Identification of Clinical Yeast Isolates. Mycopathologia, 186, 213-220. https://doi.org/10.1007/s11046-020-00522-0 [details]
    • Mixão, V., Saus, E., Boekhout, T., & Gabaldón, T. (2021). Extreme diversification driven by parallel events of massive loss of heterozygosity in the hybrid lineage of Candida albicans. Genetics, 217(2), [iyaa004]. https://doi.org/10.1093/genetics/iyaa004 [details]
    • Nwaefuna, A. E., Rumbold, K., Boekhout, T., & Zhou, N. (2021). Bioethanolic yeasts from dung beetles: Tapping the potential of extremophilic yeasts for improvement of lignocellulolytic feedstock fermentation. Biotechnology for Biofuels, 14, [86]. https://doi.org/10.1186/s13068-021-01940-y [details]
    • Raghoonundon, B., Zhao, R-L., He, M-Q., Boekhout, T., Buyck, B., Cui, B-K., Davoodian, N., Geml, J., Kakishima, M., Li, T-H., McKenzie, E. H. C., Raspé, O., Vellinga, E. C., Verbeken, A., Vizzini, A., & Hyde, K. D. (2021). www.basidio.org: An Online Platform for the Classification, Identification and Nomenclature of Taxa within Basidiomycota. Chiang Mai Journal of Science, 48(5), 1186-1198. https://epg.science.cmu.ac.th/ejournal/journal-detail.php?id=11552 [details]
    • Rhimi, W., Theelen, B., Boekhout, T., Aneke, C. I., Otranto, D., & Cafarchia, C. (2021). Conventional therapy and new antifungal drugs against Malassezia infections. Medical Mycology, 59(3), 215–234. https://doi.org/10.1093/mmy/myaa087 [details]
    • Shi, D., Haas, P-J., Boekhout, T., Hahn, R. C., & Hagen, F. (2021). Neglecting Genetic Diversity Hinders Timely Diagnosis of Cryptococcus Infections. Journal of Clinical Microbiology, 59(4), [e02837-20]. https://doi.org/10.1128/JCM.02837-20 [details]
    • Theelen, B., Christinaki, A. C., Dawson, Jr, T. L., Boekhout, T., & Kouvelis, V. N. (2021). Comparative analysis of Malassezia furfur mitogenomes and the development of a mitochondria-based typing approach. FEMS Yeast Research, 21(7), [foab051]. https://doi.org/10.1093/femsyr/foab051 [details]
    • Wang, M-M., Groenewald, M., Wu, F., Guo, Y-T., Wang, Q-M., & Boekhout, T. (2021). Intraspecific nucleotide divergence in Saccharomycodes ludwigii, and proposal of Saccharomycodes pseudoludwigii sp. nov, a new apiculate yeast isolated from China. Antonie van Leeuwenhoek, 114(5), 553-559. https://doi.org/10.1007/s10482-021-01540-8
    • Yurkov, A., Alves, A., Bai, F-Y., Boundy-Mills, K., Buzzini, P., Čadež, N., Cardinali, G., Casaregola, S., Chaturvedi, V., Collin, V., Fell, J. W., Girard, V., Groenewald, M., Hagen, F., Hittinger, C. T., Kachalkin, A. V., Kostrzewa, M., Kouvelis, V., Libkind, D., ... Boekhout, T. (2021). Nomenclatural issues concerning cultured yeasts and other fungi: why it is important to avoid unneeded name changes. IMA Fungus, 12, [18]. https://doi.org/10.1186/s43008-021-00067-x [details]
    • Zeghal, E., Vaksmaa, A., Vielfaure, H., Boekhout, T., & Niemann, H. (2021). The Potential Role of Marine Fungi in Plastic Degradation – A Review. Frontiers in Marine Science, 8, [738877]. https://doi.org/10.3389/fmars.2021.738877 [details]

    2020

    • Arastehfar, A., Daneshnia, F., Hafez, A., Khodavaisy, S., Najafzadeh, M-J., Charsizadeh, A., Zarrinfar, H., Salehi, M., Zare Shahrabadi, Z., Sasani, E., Zomorodian, K., Pan, W., Hagen, F., Ilkit, M., Kostrzewa, M., & Boekhout, T. (2020). Antifungal susceptibility, genotyping, resistance mechanism, and clinical profile of Candida tropicalis blood isolates. Medical Mycology, 58(6), 766–773. https://doi.org/10.1093/mmy/myz124 [details]
    • Arastehfar, A., Daneshnia, F., Hilmioğlu-Polat, S., Fang, W., Yaşar, M., Polat, F., Metin, D. Y., Rigole, P., Coenye, T., Ilkit, M., Pan, W., Liao, W., Hagen, F., Kostrzewa, M., Perlin, D. S., Lass-Flörl, C., & Boekhout, T. (2020). First Report of Candidemia Clonal Outbreak Caused by Emerging Fluconazole-Resistant Candida parapsilosis Isolates Harboring Y132F and/or Y132F+K143R in Turkey. Antimicrobial Agents and Chemotherapy, 64(10), [e01001-20]. https://doi.org/10.1128/AAC.01001-20 [details]
    • Arastehfar, A., Daneshnia, F., Najafzadeh, M. J., Hagen, F., Mahmoudi, S., Salehi, M., Zarrinfar, H., Namvar, Z., Zareshahrabadi, Z., Khodavaisy, S., Zomorodian, K., Pan, W., Theelen, B., Kostrzewa, M., Boekhout, T., & Lass-Flörl, C. (2020). Evaluation of Molecular Epidemiology, Clinical Characteristics, Antifungal Susceptibility Profiles, and Molecular Mechanisms of Antifungal Resistance of Iranian Candida parapsilosis Species Complex Blood Isolates. Frontiers in Cellular and Infection Microbiology, 10, [206]. https://doi.org/10.3389/fcimb.2020.00206 [details]
    • Arastehfar, A., Lass-Flörl, C., Garcia-Rubio, R., Daneshnia, F., Ilkit, M., Boekhout, T., Gabaldon, T., & Perlin, D. S. (2020). The Quiet and Underappreciated Rise of Drug-Resistant Invasive Fungal Pathogens. Journal of Fungi, 6(3), [138]. https://doi.org/10.3390/jof6030138 [details]
    • Arastehfar, A., Lim, W., Daneshnia, F., van de Sande, W. W. J., Fahal, A. H., Desnos-Ollivier, M., de Hoog, G. S., Boekhout, T., & Ahmed, S. A. (2020). Madurella real-time PCR, a novel approach for eumycetoma diagnosis. PLoS Neglected Tropical Diseases, 14(1), [e0007845]. https://doi.org/10.1371/journal.pntd.0007845 [details]
    • Chen, M., Hong, N., Hu, S., Wang, P., Guan, H., Xiao, M., Zhu, X., Al-Hatmi, A. M. S., Zhou, Z., Gao, L., Boekhout, T., Xu, J., Xu, Y., Liao, W., & Yang, Y. (2020). Molecular identification of Cryptococcus gattii from cerebrospinal fluid using single-cell sequencing: A case study. Journal of Infection, 81(4), 634-638. https://doi.org/10.1016/j.jinf.2020.06.040 [details]
    • El-Samawaty, AEA., Boekhout, T., Yassin, M. A., & Abdel-Wahab, M. A. (2020). Saturnispora mangrovi f.a., sp. nov. from Syhat mangrove, Saudi Arabia. International Journal of Systematic and Evolutionary Microbiology, 70(2), 977-981. https://doi.org/10.1099/ijsem.0.003859 [details]
    • Hernández-Cervantes, A., Znaidi, S., van Wijlick, L., Denega, I., Basso, V., Ropars, J., Sertour, N., Sullivan, D., Moran, G., Basmaciyan, L., Bon, F., Dalle, F., Bougnoux, M-E., Boekhout, T., Yang, Y., Li, Z., Bachellier-Bassi, S., & d'Enfert, C. (2020). A conserved regulator controls asexual sporulation in the fungal pathogen Candida albicans. Nature Communications, 11, [6224]. https://doi.org/10.1038/s41467-020-20010-9 [details]
    • Kord, M., Salehi, M., Khodavaisy, S., Hashemi, S. J., Daie Ghazvini, R., Rezaei, S., Maleki, A., Elmimoghaddam, A., Alijani, N., Abdollahi, A., Doomanlou, M., Ahmadikia, K., Rashidi, N., Pan, W., Boekhout, T., & Arastehfar, A. (2020). Epidemiology of yeast species causing bloodstream infection in Tehran, Iran (2015-2017); superiority of 21-plex PCR over the Vitek 2 system for yeast identification. Journal of Medical Microbiology, 69(5), 712-720. https://doi.org/10.1099/jmm.0.001189 [details]
    • Megri, Y., Arastehfar, A., Boekhout, T., Daneshnia, F., Hörtnagl, C., Sartori, B., Hafez, A., Pan, W., Lass-Flörl, C., & Hamrioui, B. (2020). Candida tropicalis is the most prevalent yeast species causing candidemia in Algeria: The urgent need for antifungal stewardship and infection control measures. Antimicrobial Resistance & Infection Control, 9, [50]. https://doi.org/10.1186/s13756-020-00710-z [details]
    • Rhimi, W., Aneke, C. I., Annoscia, G., Otranto, D., Boekhout, T., & Cafarchia, C. (2020). Effect of chlorogenic and gallic acids combined with azoles on antifungal susceptibility and virulence of multidrug-resistant Candida spp. and Malassezia furfur isolates. Medical Mycology, 58(8), 1091-1101. https://doi.org/10.1093/mmy/myaa010 [details]
    • Rhimi, W., Theelen, B., Boekhout, T., Otranto, D., & Cafarchia, C. (2020). Malassezia spp. Yeasts of Emerging Concern in Fungemia. Frontiers in Cellular and Infection Microbiology, 10, [370]. https://doi.org/10.3389/fcimb.2020.00370 [details]
    • Salehi, M., Ahmadikia, K., Mahmoudi, S., Kalantari, S., Jamalimoghadamsiahkali, S., Izadi, A., Kord, M., Dehghan Manshadi, S. A., Seifi, A., Ghiasvand, F., Khajavirad, N., Ebrahimi, S., Koohfar, A., Boekhout, T., & Khodavaisy, S. (2020). Oropharyngeal candidiasis in hospitalised COVID-19 patients from Iran. Mycoses, 63(8), 771-778. https://doi.org/10.1111/myc.13137 [details]
    • Stavrou, A. A., Pérez-Hansen, A., Lackner, M., Lass-Flörl, C., & Boekhout, T. (2020). Elevated minimum inhibitory concentrations to antifungal drugs prevail in 14 rare species of candidemia-causing Saccharomycotina yeasts. Medical Mycology, 58(7), 987-995. https://doi.org/10.1093/mmy/myaa005 [details]
    • Toplis, B., Bosch, C., Schwartz, I. S., Kenyon, C., Boekhout, T., Perfect, J. R., & Botha, A. (2020). The virulence factor urease and its unexplored role in the metabolism of Cryptococcus neoformans. FEMS Yeast Research, 20(4), [foaa031]. https://doi.org/10.1093/femsyr/foaa031 [details]
    • Vatanshenassan, M., Boekhout, T., Mauder, N., Robert, V., Maier, T., Meis, J. F., Berman, J., Then, E., Kostrzewa, M., & Hagen, F. (2020). Evaluation of Microsatellite Typing, ITS Sequencing, AFLP Fingerprinting, MALDI-TOF MS, and Fourier-Transform Infrared Spectroscopy Analysis of Candida auris. Journal of Fungi, 6(3), [146]. https://doi.org/10.3390/jof6030146 [details]

    2019

    • Arastehfar, A., Bakhtiari, M., Daneshnia, F., Fang, W., Sadati, S. K., Al-Hatmi, A. M. S., ... Boekhout, T. (2019). First fungemia case due to environmental yeast Wickerhamomyces myanmarensis: detection by multiplex qPCR and antifungal susceptibility. Future Microbiology, 14(4), 267-274. https://doi.org/10.2217/fmb-2018-0253 [details]
    • Arastehfar, A., Daneshnia, F., Farahyar, S., Fang, W., Salimi, M., Salehi, M., ... Boekhout, T. (2019). Incidence and spectrum of yeast species isolated from the oral cavity of Iranian patients suffering from hematological malignancies. Journal of Oral Microbiology, 11(1), [1601061]. https://doi.org/10.1080/20002297.2019.1601061 [details]
    • Arastehfar, A., Daneshnia, F., Kord, M., Roudbary, M., Zarrinfar, H., Fang, W., ... Boekhout, T. (2019). Comparison of 21-Plex PCR and API 20C AUX, MALDI-TOF MS, and rDNA Sequencing for a Wide Range of Clinically Isolated Yeast Species: Improved Identification by Combining 21-Plex PCR and API 20C AUX as an Alternative Strategy for Developing Countries. Frontiers in Cellular and Infection Microbiology, 9, [21]. https://doi.org/10.3389/fcimb.2019.00021 [details]
    • Arastehfar, A., Daneshnia, F., Kord, M., Roudbary, M., Zarrinfar, H., Fang, W., ... Boekhout, T. (2019). Corrigendum: Comparison of 21-Plex PCR and API 20C AUX, MALDI-TOF MS, and rDNA Sequencing for a Wide Range of Clinically Isolated Yeast Species: Improved Identification by Combining 21-Plex PCR and API 20C AUX as an Alternative Strategy for Developing Countries. Frontiers in Cellular and Infection Microbiology, 9, [176]. https://doi.org/10.3389/fcimb.2019.00176
    • Arastehfar, A., Daneshnia, F., Salehi, M-R., Zarrinfar, H., Khodavaisy, S., Haas, P-J., Roudbary, M., Najafzadeh, M-J., Zomorodian, K., Charsizadeh, A., Brouwer, C., Pan, W., Hagen, F., & Boekhout, T. (2019). Corrigendum: Molecular characterization and antifungal susceptibility testing of Candida nivariensis from blood samples – an Iranian multicentre study and a review of the literature. Journal of Medical Microbiology, 68(11), 1695. https://doi.org/10.1099/jmm.0.001075
    • Arastehfar, A., Daneshnia, F., Salehi, M. R., Zarrinfar, H., Khodavaisy, S., Haas, P-J., Roudbary, M., Najafzadeh, M-J., Zomorodian, K., Charsizadeh, A., Brouwer, C., Pan, W., Hagen, F., & Boekhout, T. (2019). Molecular characterization and antifungal susceptibilitytesting of Candida nivariensis from blood samples – an Iranian multicentre study and a review of the literature. Journal of Medical Microbiology, 68(5), 770-777. https://doi.org/10.1099/jmm.0.000963 [details]
    • Arastehfar, A., Daneshnia, F., Zomorodian, K., Najafzadeh, M. J., Khodavaisy, S., Zarrinfar, H., Hagen, F., Zare Shahrabadi, Z., Lackner, M., Mirhendi, H., Salehi, M., Roudbary, M., Pan, W., Kostrzewa, M., & Boekhout, T. (2019). Low level of antifungal resistance in Iranian isolates of Candida glabrata recovered from blood samples in a multicenter study from 2015 to 2018 and potential prognostic values of genotyping and sequencing of PDR1. Antimicrobial Agents and Chemotherapy, 63(7), [e02503-18]. https://doi.org/10.1128/AAC.02503-18 [details]
    • Arastehfar, A., Fang, W., Al-Hatmi, A. M. S., Afsarian, M. H., Daneshnia, F., Bakhtiari, M., ... Boekhout, T. (2019). Corrigendum: Unequivocal identification of an underestimated opportunistic yeast species, Cyberlindnera fabianii, and its close relatives using a dual-function PCR and literature review of published cases. Medical Mycology, 57(8), [e12]. https://doi.org/10.1093/mmy/myz025
    • Arastehfar, A., Fang, W., Al-Hatmi, A. M. S., Afsarian, M. H., Daneshnia, F., Bakhtiari, M., ... Boekhout, T. (2019). Unequivocal identification of an underestimated opportunistic yeast species, Cyberlindnera fabianii, and its close relatives using a dual-function PCR and literature review of published cases. Medical Mycology, 57(7), 833–840. https://doi.org/10.1093/mmy/myy148 [details]
    • Arastehfar, A., Fang, W., Daneshnia, F., Al-Hatmi, A. M. S., Liao, W., Pan, W., ... Boekhout, T. (2019). Novel multiplex real-time quantitative PCR detecting system approach for direct detection of Candida auris and its relatives in spiked serum samples. Future Microbiology, 14(1), 33-45. https://doi.org/10.2217/fmb-2018-0227 [details]
    • Arastehfar, A., Fang, W., Pan, W., Lackner, M., Liao, W., Badiee, P., ... Boekhout, T. (2019). YEAST PANEL multiplex PCR for identification of clinically important yeast species. Diagnostic Microbiology and Infectious Disease, 93(2), 112-119. https://doi.org/10.1016/j.diagmicrobio.2018.09.007 [details]
    • Arastehfar, A., Khodavaisy, S., Daneshnia, F., Najafzadeh, M-J., Mahmoudi, S., Charsizadeh, A., ... Boekhout, T. (2019). Molecular Identification, Genotypic Diversity, Antifungal Susceptibility, and Clinical Outcomes of Infections Caused by Clinically Underrated Yeasts, Candida orthopsilosis, and Candida metapsilosis: An Iranian Multicenter Study (2014–2019). Frontiers in Cellular and Infection Microbiology, 9, [264]. https://doi.org/10.3389/fcimb.2019.00264 [details]
    • Arastehfar, A., Wickes, B. L., Ilkit, M., Pincus, D. H., Daneshnia, F., Pan, W., ... Boekhout, T. (2019). Identification of Mycoses in Developing Countries. Journal of Fungi, 5(4), [90]. https://doi.org/10.3390/jof5040090 [details]
    • Cogliati, M., Desnos-Ollivier, M., McCormick-Smith, I., Rickerts, V., Ferreira-Paim, K., Meyer, W., ... Lockhart, S. R. (2019). Genotypes and population genetics of cryptococcus neoformans and cryptococcus gattii species complexes in Europe and the mediterranean area. Fungal Genetics and Biology, 129, 16-29. https://doi.org/10.1016/j.fgb.2019.04.001 [details]
    • Crous, P. W., Carnegie, A. J., Wingfield, M. J., Sharma, R., Mughini, G., Noordeloos, M. E., Santini, A., Shouche, Y. S., Bezerra, J. D. P., Dima, B., Guarnaccia, V., Imrefi, I., Jurjević, Knapp, D. G., Kovács, G. M., Magistà, D., Perrone, G., Rämä, T., Rebriev, Y. A., ... Groenewald, J. Z. (2019). Fungal planet description sheets: 868-950. Persoonia: Molecular Phylogeny and Evolution of Fungi, 42, 291-473. https://doi.org/10.3767/persoonia.2019.42.11
    • Fotedar, R., Fell, J. W., Boekhout, T., Kolecka, A., Zeyara, A., Kaul, R., ... Al Marri, M. (2019). Cystobasidium halotolerans sp. nov., a novel basidiomycetous yeast species isolated from the Arabian Gulf. International Journal of Systematic and Evolutionary Microbiology, 69(3), 839-845. https://doi.org/10.1099/ijsem.0.003250 [details]
    • Fotedar, R., Kolecka, A., Boekhout, T., Fell, J. W., Anand, A., Al Malaki, A., ... Al Marri, M. (2019). Corrigendum: Naganishia qatarensis sp. nov., a novel basidiomycetous yeast species from a hypersaline marine environment in Qatar. International Journal of Systematic and Evolutionary Microbiology, 69(3), 873. https://doi.org/10.1099/ijsem.0.003257
    • Fotedar, R., Kolecka, A., Boekhout, T., Fell, J. W., Zeyara, A., Al Malki, A., & Al Marri, M. (2019). Kondoa qatarensis f.a., sp. nov., a novel yeast species isolated from marine water in Qatar. International Journal of Systematic and Evolutionary Microbiology, 69(2), 486–492. https://doi.org/10.1099/ijsem.0.003182 [details]
    • Fotedar, R., Sandoval-Denis, M., Kolecka, A., Zeyara, A., Al Malki, A., Al Shammari, H., ... Boekhout, T. (2019). Toxicocladosporium aquimarinum sp. nov. and Toxicocladosporium qatarense sp. nov., isolated from marine waters of the Arabian Gulf surrounding Qatar. International Journal of Systematic and Evolutionary Microbiology, 69(10), 2992-3000. https://doi.org/10.1099/ijsem.0.003482 [details]
    • Hoeksma, J., Misset, T., Wever, C., Kemmink, J., Kruijtzer, J., Versluis, K., ... den Hertog, J. (2019). A new perspective on fungal metabolites: identification of bioactive compounds from fungi using zebrafish embryogenesis as read-out. Scientific Reports, 9, [17546]. https://doi.org/10.1038/s41598-019-54127-9 [details]
    • Hong, N., Chen, M., Xu, N., Al-Hatmi, A. M. S., Zhang, C., Pan, W. H., ... Liao, W. Q. (2019). Genotypic diversity and antifungal susceptibility of Cryptococcus neoformans isolates from paediatric patients in China. Mycoses, 62(2), 171-180. https://doi.org/10.1111/myc.12863 [details]
    • Kortsinoglou, A. M., Korovesi, A. G., Theelen, B., Hagen, F., Boekhout, T., & Kouvelis, V. N. (2019). The mitochondrial intergenic regions nad1-cob and cob-rps3 as molecular identification tools for pathogenic members of the genus Cryptococcus. FEMS Yeast Research, 19(8), [foz077]. https://doi.org/10.1093/femsyr/foz077 [details]
    • Mixão, V., Perez Hansen, A., Saus, E., Boekhout, T., Lass-Florl, C., & Gabaldón, T. (2019). Whole-Genome Sequencing of the Opportunistic Yeast Pathogen Candida inconspicua Uncovers Its Hybrid Origin. Frontiers in Genetics, 10, [383]. https://doi.org/10.3389/fgene.2019.00383 [details]
    • Richter, C., Yurkov, A. M., Boekhout, T., & Stadler, M. (2019). Diversity of Tilletiopsis-Like Fungi in Exobasidiomycetes (Ustilaginomycotina) and Description of Six Novel Species. Frontiers in Microbiology, 10, [2544]. https://doi.org/10.3389/fmicb.2019.02544 [details]
    • Salah, H., Lackner, M., Houbraken, J., Theelen, B., Lass-Flörl, C., Boekhout, T., ... Taj-Aldeen, S. J. (2019). The Emergence of Rare Clinical Aspergillus Species in Qatar: Molecular Characterization and Antifungal Susceptibility Profiles. Frontiers in Microbiology, 10, [1677]. https://doi.org/10.3389/fmicb.2019.01677 [details]
    • Stavrou, A. A., Lackner, M., Lass-Flörl, C., & Boekhout, T. (2019). The changing spectrum of Saccharomycotina yeasts causing candidemia: phylogeny mirrors antifungal susceptibility patterns for azole drugs and amphothericin B. FEMS Yeast Research, 19(4), [foz037]. https://doi.org/10.1093/femsyr/foz037 [details]
    • Theelen, B., Cafarchia, C., Gaitanis, G., Bassukas, I. D., Boekhout, T., & Dawson, Jr, T. L. (2019). Corrigendum: Malassezia ecology, pathophysiology, and treatment. Medical Mycology, 57(3), e2. https://doi.org/10.1093/mmy/myy046
    • Vatanshenassan, M., Arastehfar, A., Boekhout, T., Berman, J., Lass-Flörl, C., Sparbier, K., & Kostrzewa, M. (2019). Anidulafungin Susceptibility Testing of Candida glabrata Isolates from Blood Cultures by the MALDI Biotyper Antibiotic (Antifungal) Susceptibility Test Rapid Assay. Antimicrobial Agents and Chemotherapy, 63(9), [e00554-19]. https://doi.org/10.1128/AAC.00554-19 [details]
    • Vatanshenassan, M., Boekhout, T., Meis, J. F., Berman, J., Chowdhary, A., Ben-Ami, R., ... Kostrzewa, M. (2019). Candida auris Identification and Rapid Antifungal Susceptibility Testing Against Echinocandins by MALDI-TOF MS. Frontiers in Cellular and Infection Microbiology, 9, [20]. https://doi.org/10.3389/fcimb.2019.00020 [details]
    • Vu, D., Groenewald, M., de Vries, M., Gehrmann, T., Stielow, B., Eberhardt, U., ... Verkley, G. J. M. (2019). Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher taxon delimitation. Studies in Mycology, 92, 135-154. https://doi.org/10.1016/j.simyco.2018.05.001 [details]
    • Zhang, Q., Li, H., Zhang, K., Arastehfar, A., Daneshnia, F., Fang, W., ... Pan, W. (2019). Lumbar drainage for the treatment of refractory intracranial hypertension in HIV-negative cryptococcal meningitis. Future Microbiology, 14(10), 859-866. https://doi.org/10.2217/fmb-2019-0084 [details]

    2018

    2017

    • Badiee, P., Badali, H., Boekhout, T., Diba, K., Moghadam, A. G., Hossaini Nasab, A., ... Soltani, J. (2017). Antifungal susceptibility testing of Candida species isolated from the immunocompromised patients admitted to ten university hospitals in Iran. BMC Infectious Diseases, 17, [727]. https://doi.org/10.1186/s12879-017-2825-7 [details]
    • Ben Hassine Ben Ali, M., Boekhout, T., & Thorn, G. (2017). Assemblages of fungi associated with cork oak forests in northwestern Tunisia. Nova Hedwigia, 105(1-2), 121-134. https://doi.org/10.1127/nova_hedwigia/2016/0378 [details]
    • Boekhout, T., & Dijksterhuis, J. (2017). Fungi for food and drinks. In J. van Doorn, J. Luirink, J. van der Oost, B. Oudega, L. Robertson, H. Smit, P. Willemsen, ... C. Biemans (Eds.), Mighty Microbes: The amazing world of microorganisms (pp. 79-80). Castricum: Stichting Microcanon.
    • Boekhout, T., Bracharz, F., Mehlmer, N., & Brueck, T. (2017). Opportunities and challenges in the development of Cutaneotrichosporon oleaginosus ATCC 20509 as a new cell factory for custom tailored microbial oils. Microbial Cell Factories, 16. https://doi.org/10.1186/s12934-017-0791-9
    • Botschuijver, S., Roeselers, G., Levin, E., Jonkers, D. M., Welting, O., Heinsbroek, S., de Weerd, H. H., Boekhout, T., Fornai, M., Masclee, A. A., Schuren, F. H. J., de Jonge, W. J., Seppen, J., & van den Wijngaard, R. M. (2017). Intestinal Fungal Dysbiosis Associated With Visceral Hypersensitivity in Patients With Irritable Bowel Syndrome and Rats. Gastroenterology, 153(4), 1026-1039. https://doi.org/10.1053/j.gastro.2017.06.004 [details]
    • Cogliati, M., Puccianti, E., Montagna, M. T., De Donno, A., Susever, S., Ergin, C., Velegraki, A., Ellabib, M. S., Nardoni, S., Macci, C., Trovato, L., Dipineto, L., Rickerts, V., Akcaglar, S., Mlinaric-Missoni, E., Bertout, S., Venca, A. C. F., Sampaio, A. C., Criseo, G., ... Colom, M. F. (2017). Fundamental niche prediction of the pathogenicyeasts Cryptococcus neoformans and Cryptococcus gattii in Europe. Environmental Microbiology, 19(10), 4318-4325. https://doi.org/10.1111/1462-2920.13915 [details]
    • Fang, W., Zhang, L., Liu, J., Denning, D. W., Hagen, F., Jiang, W-W., ... Pan, W. (2017). Tuberculosis/cryptococcosis co-infection in China between 1965 and 2016. Emerging Microbes & Infections, 6, e73. https://doi.org/10.1038/emi.2017.61 [details]
    • Ferreira-Paim, K., Andrade-Silva, L., Fonseca, F., Ferreira, T., Mora, D., Andrade-Silva, J., Khan, A., Dao, A., C. Reis, E., Almeida, M., Maltos, A., Rodrigues Jr, V., Trilles, L., Rickerts, V., Chindamporn, A., Sykes, J., Cogliati, M., Nielsen, K., Boekhout, T., & Silva-Vergara, M. L. (2017). MLST-Based Population Genetic Analysis in a Global Context Reveals Clonality amongst Cryptococcus neoformans var. grubii VNI Isolates from HIV Patients in Southeastern Brazil. PLoS Neglected Tropical Diseases, 11, [e0005223]. https://doi.org/10.1371/journal.pntd.0005223
    • Hong, N., Chen, M., Fang, W., Al-Hatmi, A. M. S., Boekhout, T., Xu, J., ... Liao, W. (2017). Cryptococcosis in HIV-negative Patients with Renal Dialysis: A Retrospective Analysis of Pooled Cases. Mycopathologia, 182(9-10), 887-896. https://doi.org/10.1007/s11046-017-0163-3 [details]
    • Hudson, L. N., Newbold, T., Contu, S., Hill, S. L. L., Lysenko, I., De Palma, A., Phillips, H. R. P., Alhusseini, T. I., Bedford, F. E., Bennett, D. J., Booth, H., Burton, V. J., Chng, C. W. T., Choimes, A., Correia, D. L. P., Day, J., Echeverría-Londoño, S., Emerson, S. R., Gao, D., ... Purvis, A. (2017). The database of the PREDICTS (Projecting Responses of Ecological Diversity In Changing Terrestrial Systems) project. Ecology and Evolution, 7(1), 145-188. https://doi.org/10.1002/ece3.2579
    • Khayhan, K., Hagen, F., Norkaew, T., Puengchan, T., Boekhout, T., & Sriburee, P. (2017). Isolation of Cryptococcus gattii from a Castanopsis argyrophylla tree hollow (Mai-Kaw), Chiang Mai, Thailand. Mycopathologia, 182(3-4), 365-370. https://doi.org/10.1007/s11046-016-0067-7 [details]
    • Krisai-Greilhuber, I., Chen, Y., Jabeen, S., Madrid, H., Marincowitz, S., Razaq, A., ... Yu, J-Y. (2017). Fungal Systematics and Evolution: FUSE 3. Sydowia, 69, 229-264.
    • Kurtzman, C. P., & Boekhout, T. (2017). Yeasts as Distinct Life Forms of Fungi. In P. Buzzini, M-A. Lachance, & A. Yurkov (Eds.), Yeasts in Natural Ecosystems: Ecology (pp. 1-37). Cham: Springer. https://doi.org/10.1007/978-3-319-61575-2_1 [details]
    • Li, Y., Fang, W., Jiang, W., Hagen, F., Liu, J., Zhang, L., ... Pan, W. (2017). Cryptococcosis in patients with diabetes mellitus II in mainland China: 1993‐2015. Mycoses, 60(11), 706-713. https://doi.org/10.1111/myc.12645 [details]
    • Liu, X-Z., Groenewald, M., Boekhout, T., & Bai, F-Y. (2017). Heitmania gen. nov., a new yeast genus in Microbotryomycetes, and description of three novel species: Heitmania litseae sp. nov., Heitmania castanopsis sp. nov. and Heitmania elacocarpi sp. nov. International Journal of Systematic and Evolutionary Microbiology, 67(11), 4534-4540. https://doi.org/10.1099/ijsem.0.002323 [details]
    • Nguyen, H-V., & Boekhout, T. (2017). Characterization of Saccharomyces uvarum (Beijerinck, 1898) and related hybrids: assessment of molecular markers that predict the parent and hybrid genomes and a proposal to name yeast hybrids. FEMS Yeast Research, 17(2), [fox014]. https://doi.org/10.1093/femsyr/fox014 [details]
    • Sun, S., Yadav, V., Billmyre, R. B., Cuomo, C. A., Nowrousian, M., Wang, L., ... Heitman, J. (2017). Fungal genome and mating system transitions facilitated by chromosomal translocations involving intercentromeric recombination. PLoS Biology, 15(8), [e2002527]. https://doi.org/10.1371/journal.pbio.2002527 [details]
    • Taj-Aldeen, S. J., Almaslamani, M., Theelen, B. J. F., & Boekhout, T. (2017). Phylogenetic analysis reveals two genotypes of the emerging fungus Mucor indicus, an opportunistic human pathogen in immunocompromised patients. Emerging Microbes & Infections, 6, [e63]. https://doi.org/10.1038/emi.2017.51 [details]
    • Vaezi, A., Fakhim, H., Khodavaisy, S., Alizadeh, A., Nazeri, M., Soleimani, A., ... Badali, H. (2017). Epidemiological and mycological characteristics of candidemia in Iran. Journal de Mycologie Medicale, 27(2), 146-152. https://doi.org/10.1016/j.mycmed.2017.02.007 [details]
    • Vreulink, J-M., Khayhan, K., Hagen, F., Botes, A., Moller, L., Boekhout, T., ... Botha, A. (2017). Presence of pathogenic cryptococci on trees situated in two recreational areas in South Africa. Fungal Ecology, 30, 101-111. https://doi.org/10.1016/j.funeco.2017.09.005
    • Zhou, N., Schifferdecker, A-J., Gamero, A., Compagno, C., Boekhout, T., Piškur, J., & Knecht, W. (2017). Kazachstania gamospora and Wickerhamomyces subpelliculosus: Two alternative baker’s yeasts in the modern bakery. International Journal of Food Microbiology, 250, 45-58. https://doi.org/10.1016/j.ijfoodmicro.2017.03.013 [details]
    • Zhu, Y., Engström, P. G., Tellgren-Roth, C., Baudo, C. D., Kennell, J. C., Sun, S., ... Lehtiö, J. (2017). Proteogenomics produces comprehensive and highly accurate protein-coding gene annotation in a complete genome assembly of Malassezia sympodialis. Nucleic Acids Research, 45(5), 2629-2643. https://doi.org/10.1093/nar/gkx006 [details]

    2009

    • Boekhout, T., Gueidan, C., de Hoog, S., Samson, R., Varga, J., & Walther, G. (2009). Fungal taxonomy: New developments in medically important fungi. Current Fungal Infection Reports, 3(3), 170-178. https://doi.org/10.1007/s12281-009-0022-x [details]

    2019

    2017

    • Botschuijver, S., Roeselers, G., Levin, E., Jonkers, D., Welting, O., Heinsbroek, S., de Weerd, H. H., Boekhout, T., Fornai, M., Masclee, A., de Jonge, W., Seppen, J., & van den Wijngaard, R. M. (2017). Fecal Transplantation and Mycobiome Analysis Showing the Relevance of Fungi in Post Stress Visceral Hypersensitivity of Maternal Separated Rats. Gastroenterology, 152(5, Supplement 1), S160. [732]. https://doi.org/10.1016/S0016-5085(17)30856-9 [details]

    2017

    • Boekhout, T. (2017). Theatrum Fungorum: Van Campernoelje en Kleine Deeltjens. (Oratiereeks; No. 583). Universiteit van Amsterdam. [details]
    • Boekhout, T. (Author). (2017). Cletus P. Kurtzman 1938-2017. Web publication/site, FEMS. Retrieved from https://fems-microbiology.org/cletus-p-kurtzman-1938-2017/ [details]
    • Boekhout, T., & Groenewald, M. (2017). Bakkersgist, Saccharomyces cervisiae. Cahiers Bio-Wetenschappen en Maatschappij, 36(4), 65-68. [details]
    • Boekhout, T., & Sonnenberg, A. (2017). Eetbare paddenstoelen. Cahiers Bio-Wetenschappen en Maatschappij, 36(4), 56-58. [details]

    2018

    2022

    2020

    • Khayhan, K. (2020). The Cryptococcus neoformans/Cryptococcus gattii species complex in Asia. [details]
    • Vatanshenassan, M. (2020). New methods for the rapid identification and antifungal susceptibility testing of clinically important Candida species. [details]

    2019

    • Arastehfar, A. (2019). Development of fungal identification tools and evaluation of microbiological and clinical profiles of Candida species from Iran. [details]
    This list of publications is extracted from the UvA-Current Research Information System. Questions? Ask the library or the Pure staff of your faculty / institute. Log in to Pure to edit your publications. Log in to Personal Page Publication Selection tool to manage the visibility of your publications on this list.
  • Nevenwerkzaamheden
    • ICY, IUMS
      Commissioner Int. Commission of Yeats
    • ICY, IUMS
      Member Int. Com. on Taxonomy of Yeasts
    • CBS-KNAW
      Groepsleider Gisten en Basidiomyceten
    • Shanghai Key Lab. of Molecular Med. Myc.
      Visiting professor
    • IM-Chinese Academy of Sciences
      Research Fellow Inst. of Microbiology
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