Fransz, P., van de Belt, J., & de Jong, H. (2023). Extended DNA Fibers for High-Resolution Mapping. In Methods in Molecular Biology (pp. 351-363). (Methods in Molecular Biology; Vol. 2672). Humana Press Inc., 2007. https://doi.org/10.1007/978-1-0716-3226-0_22
de Jong, H., van de Belt, J., & Fransz, P. (2023). Critical Steps in DAPI and FISH Imaging of Chromosome Spread Preparations. In Methods in Molecular Biology (pp. 247-256). (Methods in Molecular Biology; Vol. 2672). Humana Press Inc., 2007. https://doi.org/10.1007/978-1-0716-3226-0_15
2020
Fuentes, R. R., Hesselink, T., Nieuwenhuis, R., Bakker, L., Schijlen, E., van Dooijeweert, W., Diaz Trivino, S., de Haan, J. R., Sanchez Perez, G., Zhang, X., Fransz, P., de Jong, H., van Dijk, A. D. J., de Ridder, D., & Peters, S. A. (2020). Meiotic recombination profiling of interspecific hybrid F1 tomato pollen by linked read sequencing. Plant Journal, 102(3), 480-492. Advance online publication. https://doi.org/10.1111/tpj.14640[details]
Santos, A. P., Gaudin, V., Mozgová, I., Pontvianne, F., Schubert, D., Tek, A. L., Dvořáčková, M., Liu, C., Fransz, P., Rosa, S., & Farrona, S. (2020). Tidying-up the plant nuclear space: Domains, functions, and dynamics. Journal of Experimental Botany, 71(17), 5160-5178. https://doi.org/10.1093/jxb/eraa282[details]
de Maagd, R. A., Loonen, A., Chouaref, J., Pelé, A., Meijer-Dekens, F., Fransz, P., & Bai, Y. (2020). CRISPR/Cas inactivation of RECQ4 increases homeologous crossovers in an interspecific tomato hybrid. Plant Biotechnology Journal, 18(3), 805-813. https://doi.org/10.1111/pbi.13248[details]
Stam, M., Tark-Dame, M., & Fransz, P. (2019). 3D genome organization: a role for phase separation and loop extrusion? Current Opinion in Plant Biology, 48, 36-46. https://doi.org/10.1016/j.pbi.2019.03.008[details]
2018
Bey, T. D., Koini, M., & Fransz, P. (2018). Fluorescence In Situ Hybridization (FISH) and Immunolabeling on 3D Preserved Nuclei. In M. Bemer, & C. Baroux (Eds.), Plant Chromatin Dynamics: Methods and Protocols (pp. 467-480). (Methods in Molecular Biology; Vol. 1675). Humana Press. https://doi.org/10.1007/978-1-4939-7318-7_27[details]
Chouaref, J., de Boer, E., Fransz, P., & Stam, M. (2018). Protocol for Chromatin Immunoprecipitation of Meiotic-Stage-Specific Tomato Anthers. Current protocols in plant biology, 3(3), Article e20074. https://doi.org/10.1002/cppb.20074[details]
2017
Snoek, B. L., Pavlova, P., Tessadori, F., Peeters, A. J. M., Bourbousse, C., Barneche, F., de Jong, H., Fransz, P. F., & van Zanten, M. (2017). Genetic Dissection of Morphometric Traits Reveals That Phytochrome B Affects Nucleus Size and Heterochromatin Organization in Arabidopsis thaliana. G3 (Bethesda, Md.), 7(8), 2519-2531. https://doi.org/10.1534/g3.117.043539[details]
Fransz, P., Linc, G., Lee, C-R., Alves Aflitos, S., Lasky, J. R., Toomajian, C., Ali, H., Peters, J., van Dam, P., Ji, X., Kuzak, M., Gerats, T., Schubert, I., Schneeberger, K., Colot, V., Martienssen, R., Koornneef, M., Nordborg, M., Juenger, T. E., ... Schranz, M. E. (2016). Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana. Plant Journal, 88(2), 159-178. Advance online publication. https://doi.org/10.1111/tpj.13262[details]
Alves Aflitos, S., Sanchez-Perez, G., de Ridder, D., Fransz, P., Schranz, M. E., de Jong, H., & Peters, S. A. (2015). Introgression browser: high-throughput whole-genome SNP visualization. Plant Journal, 82(1), 174-182. Advance online publication. https://doi.org/10.1111/tpj.12800[details]
Batzenschlager, M., Lermontova, I., Schubert, V., Fuchs, J., Berr, A., Koini, M. A., Houlné, G., Herzog, E., Rutten, T., Alioua, A., Fransz, P., Schmit, A. C., & Chabouté, M. E. (2015). Arabidopsis MZT1 homologs GIP1 and GIP2 are essential for centromere architecture. Proceedings of the National Academy of Sciences of the United States of America, 112(28), 8656-8660. https://doi.org/10.1073/pnas.1506351112[details]
Bourbousse, C., Mestiri, I., Zabulon, G., Bourge, M., Formiggini, F., Koini, M. A., Brown, S. C., Fransz, P., Bowler, C., & Barneche, F. (2015). Light signaling controls nuclear architecture reorganization during seedling establishment. Proceedings of the National Academy of Sciences of the United States of America, 112(21), E2836-E2844. https://doi.org/10.1073/pnas.1503512112[details]
2014
Lysak, M. A., & Fransz, P. F. (2014). From transposon to chromosome and polyploidy. An update on cytogenetics and genomics of Arabidopsis. Chromosome Research, 22(2), 99-101. Advance online publication. https://doi.org/10.1007/s10577-014-9427-7[details]
2013
van Zanten, M., Tessadori, F., Peeters, A. J. M., & Fransz, P. (2013). Environment-Induced Chromatin Reorganisation and Plant Acclimation. In G. Grafi, & N. Ohad (Eds.), Epigenetic Memory and Control in Plants (pp. 21-40). (Signaling and Communication in Plants; Vol. 18). Springer. https://doi.org/10.1007/978-3-642-35227-0_2[details]
2012
Alcázar, R., Pecinka, A., Aarts, M. G., Fransz, P. F., & Koornneef, M. (2012). Signals of speciation within Arabidopsis thaliana in comparison with its relatives. Current Opinion in Plant Biology, 15(2), 205-211. Advance online publication. https://doi.org/10.1016/j.pbi.2012.01.002[details]
van Zanten, M., Tessadori, F., Peeters, A. J. M., & Fransz, P. (2012). Shedding light on large-scale chromatin reorganization in Arabidopsis thaliana. Molecular Plant, 5(3), 583-590. Advance online publication. https://doi.org/10.1093/mp/sss030[details]
Gaussand, GMDJ. -M., Jia, Q., van der Graaff, E., Lamers, G. E. M., Fransz, P. F., Hooykaas, P. J. J., & de Pater, S. (2011). Programmed cell death in the leaves of the Arabidopsis spontaneous necrotic spots (sns-D) mutant correlates with increased expression of the eukaryotic translation initiation factor eIF4B2. Frontiers in Plant Science, 2, 9. https://doi.org/10.3389/fpls.2011.00009[details]
van Zanten, M., Koini, M. A., Geyer, R., Liu, Y., Brambilla, V., Bartels, D., Koornneef, M., Fransz, P., & Soppe, W. J. J. (2011). Seed maturation in Arabidopsis thaliana is characterized by nuclear size reduction and increased chromatin condensation. Proceedings of the National Academy of Sciences of the United States of America, 108(50), 20219-20224. https://doi.org/10.1073/pnas.1117726108[details]
2010
Pavlova, P., Tessadori, F., de Jong, H. J., & Fransz, P. (2010). Immunocytological analysis of chromatin in isolated nuclei. In L. Hennig, & C. Köhler (Eds.), Plant developmental biology: methods and protocols (pp. 413-432). (Methods in molecular biology; No. 655). Humana Press. https://doi.org/10.1007/978-1-60761-765-5_28[details]
van Zanten, M., Tessadori, F., McLoughlin, F., Smith, R., Millenaar, F. F., van Driel, R., Voesenek, L. A. C. J., Peeters, A. J. M., & Fransz, P. (2010). Photoreceptors CRYTOCHROME2 and phytochrome B control chromatin compaction in Arabidopsis. Plant Physiology, 154(4), 1686-1696. https://doi.org/10.1104/pp.110.164616[details]
2009
Fransz, P. (2009). Chromatin domains and function. In I. Meier (Ed.), Functional organization of the plant nucleus (pp. 131-155). (Plant cell monographs; No. 14). Springer. https://doi.org/10.1007/978-3-540-71058-5_7[details]
Tessadori, F., van Zanten, M., Pavlova, P., Clifton, R., Pontvianne, F., Snoek, L. B., Millenaar, F. F., Schulkes, R. K., van Driel, R., Voesenek, L. A. C. J., Spillane, C., Pikaard, C. S., Fransz, P., & Peeters, A. J. M. (2009). PHYTOCHROME B and HISTONE DEACETYLASE 6 control light-induced chromatin compaction in Arabidopsis thaliana. PLOS Genetics, 5(9), e1000638. https://doi.org/10.1371/journal.pgen.1000638[details]
van Zanten, M., Tessadori, F., Bossen, L., Peeters, A. J. M., & Fransz, P. (2010). Large-scale chromatin de-compaction induced by low light is not accompanied by nucleosomal displacement. Plant Signaling & Behavior, 5(12), 1677-1678. https://doi.org/10.4161/psb.5.12.14039[details]
2021
Chouaref, J. (2021). Defining meiotic recombination landscape in tomato. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
del Prete, S. (2017). Characterisation of transcriptional and chromatin events in relation to floral transition and identification of nuclear organisation determinants. [Thesis, fully internal, Universiteit van Amsterdam, Université Paris Saclay]. [details]
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