dhr. prof. dr. G.L. (Garry) Corthals
Faculteit der Natuurwetenschappen, Wiskunde en Informatica
Van 't Hoff Institute for Molecular Sciences
Bezoekadres
- Science Park 904
- Kamernummer: C2.251
Postadres
- Postbus 94157
1090 GD Amsterdam
Contactgegevens
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Publicaties
- Konert G, Trotta A, Kouvonen P, Rahikainen M, Durian G, Blokhina O, Fagerstedt K, Muth D, Corthals GL, Kangasjärvi S. Protein phosphatase 2A (PP2A) regulatory subunit B'γ interacts with cytoplasmic ACONITASE 3 and modulates the abundance of AOX1A and AOX1D in Arabidopsis thaliana. New Phytol. 2014 Oct 13. doi: 10.1111/nph.13097. [Epub ahead of print]
- Vehmas AP, Muth-Pawlak D, Huhtinen K, Saloniemi-Heinonen T, Jaakkola K, Laajala TD, Kaprio H, Suvitie PA, Aittokallio T, Siitari H, Perheentupa A, Poutanen M, Corthals GL. Ovarian Endometriosis Signatures Established through Discovery and Directed Mass Spectrometry Analysis. J Proteome Res. 2014 Aug 20. [Epub ahead of print] PubMed PMID: 25099244.
- Kannaste O, Suomi T, Salmi J, Uusipaikka E, Nevalainen O, Corthals GL. Cross-correlation of spectral count ranking to validate quantitative proteome measurements. J Proteome Res. 2014 Apr 4;13(4):1957-68. doi: 10.1021/pr401096z. Epub 2014 Mar 26.
- Araújo JE, Oliveira E, Kouvonen P, Corthals GL, Lodeiro C, Santos HM, Capelo JL. A journey through PROTEOSONICS. Talanta. 2014 Apr;121:71-80. doi: 10.1016/j.talanta.2013.12.054. Epub 2014 Jan 3. Review. PubMed PMID: 24607112.
- McDonnell LA, Walch A, Stoeckli M, Corthals GL. MSiMass list: a publicdatabase of identifications for protein MALDI MS imaging. J Proteome Res. 2014 Feb 7;13(2):1138-42. doi: 10.1021/pr400620y. Epub 2013 Dec 13. PubMed PMID: 24313301.
- Westermarck J, Ivaska J, Corthals GL. Identification of protein interactions involved in cellular signaling. Mol Cell Proteomics. 2013 Jul;12(7):1752-63. doi:10.1074/mcp.R113.027771. Epub 2013 Mar 12. Review. PubMed PMID: 23481661;
- Santos HM, Kouvonen P, Capelo JL, Corthals GL. On-target ultrasonic digestion of proteins. Proteomics. 2013 May;13(9):1423-7. doi: 10.1002/pmic.201200241.
- Koch S, Scifo E, Rokka A, Trippner P, Lindfors M, Korhonen R, Corthals GL, Virtanen I, Lalowski M, Tyynelä J. Cathepsin D deficiency induces cytoskeletal changes and affects cell migration pathways in the brain. Neurobiol Dis. 2013 Feb;50:107-19. doi: 10.1016/j.nbd.2012.10.004. Epub 2012 Oct 12.
- Perdomo MF, Hosia W, Jejcic A, Corthals GL, Vahlne A. Human serum protein enhances HIV-1 replication and up-regulates the transcription factor AP-1. Proc Natl Acad Sci U S A. 2012 Oct 23;109(43):17639-44. doi: 10.1073/pnas.1206893109. Epub 2012 Oct 9. .
- McDonnell L, Andrén PE, Corthals GL. Imaging mass spectrometry: a user’s guide to a new technique for biological and biomedical research. Preface. J Proteomics. 2012 Aug 30;75(16):4881-2. doi: 10.1016/j.jprot.2012.07.033.
- McDonnell LA, Heeren RM, Andrén PE, Stoeckli M, Corthals GL. Going forward: Increasing the accessibility of imaging mass spectrometry. J Proteomics. 2012 Aug 30;75(16):5113-21. doi: 10.1016/j.jprot.2012.05.016. Epub 2012 May 23.
- Santos HM, Kouvonen P, Capelo JL, Corthals GL. Isotopic labelling of peptides in tissues enhances mass spectrometric profiling. Rapid Commun Mass Spectrom. 2012 Feb 15;26(3):254-62. doi: 10.1002/rcm.5325.
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Publicaties
2018
Suni, V., Suomi, T., Tsubosaka, T., Imanishi, S. Y., Elo, L. L., & Corthals, G. L. (2018). SimPhospho: a software tool enabling confident phosphosite assignment. Bioinformatics, 34(15), 2690-2692. DOI: 10.1093/bioinformatics/bty151 [details]- Corthals, G., de Jong, L., de Koning, E. A., Roseboom, W., Buncherd, H., Wanner, M., ... de Koster, C. (2018). Identification of dynamic protein interactions from live cells. FEBS OPEN BIO, 8(1), 17-18. https://doi.org/10.1002/2211-5463.12449
2017
- Dapic, I., Uwugiaren, N., Jansen, P. J., & Corthals, G. L. (2017). Fast and Simple Protocols for Mass Spectrometry-Based Proteomics of Small Fresh Frozen Uterine Tissue Sections. Analytical Chemistry, 89(20), 10769-10775. DOI: 10.1021/acs.analchem.7b01937 [details]
- Astefanei, A., van Bommel, M., & Corthals, G. L. (2017). Surface Acoustic Wave Nebulisation Mass Spectrometry for the Fast and Highly Sensitive Characterisation of Synthetic Dyes in Textile Samples. Journal of the American Society for Mass Spectrometry, 28(10), 2108-2116. DOI: 10.1007/s13361-017-1716-x [details]
- de Jong, L., de Koning, E. A., Roseboom, W., Buncherd, H., Wanner, M. J., Dapic, I., ... de Koster, C. G. (2017). In-Culture Cross-Linking of Bacterial Cells Reveals Large-Scale Dynamic Protein-Protein Interactions at the Peptide Level. Journal of Proteome Research, 16(7), 2457-2471. DOI: 10.1021/acs.jproteome.7b00068 [details]
- Wouters, B., Dapic, I., Valkenburg, T. S. E., Wouters, S., Niezen, L., Eeltink, S., ... Schoenmakers, P. J. (2017). A cyclic-olefin-copolymer microfluidic immobilized-enzyme reactor for rapid digestion of proteins from dried blood spots. Journal of Chromatography A, 1491, 36-42. https://doi.org/10.1016/j.chroma.2017.01.078 [details]
2016
- Soderholm, S., Kainov, D. E., Ohman, T., Denisova, O. V., Schepens, B., Kulesskiy, E., ... Nyman, T. A. (2016). Phosphoproteomics to Characterize Host Response During Influenza A Virus Infection of Human Macrophages. Molecular & Cellular Proteomics, 15(10), 3203-3219. DOI: 10.1074/mcp.M116.057984
- Santio, N. M., Landor, S. K. -J., Vahtera, L., Yla-Pelto, J., Paloniemi, E., Imanishi, S. Y., ... Koskinen, P. J. (2016). Phosphorylation of Notch1 by Pim kinases promotes oncogenic signaling in breast and prostate cancer cells. Oncotarget, 7(28), 43220-43238. https://doi.org/10.18632/oncotarget.9215
- Canals, F., Elortza, F., Paradela, A., Corthals, G., Camenzuli, M., Muñoz, A., ... Corrales, F. J. (2016). The EuPA Standardization Initiative. EuPA Open Proteomics, 11, 31-32. DOI: 10.1016/j.euprot.2016.03.007
- Kolmeder, C. A., Salojarvi, J., Ritari, J., de Been, M., Raes, J., Falony, G., ... de Vos, W. M. (2016). Faecal Metaproteomic Analysis Reveals a Personalized and Stable Functional Microbiome and Limited Effects of a Probiotic Intervention in Adults. PLoS ONE, 11(4). https://doi.org/10.1371/journal.pone.0153294
- Nguyen, E. V., Imanishi, S. Y., Haapaniemi, P., Yadav, A., Saloheimo, M., Corthals, G. L., & Pakula, T. M. (2016). Quantitative site-specific phosphoproteomics of Trichoderma reesei signaling pathways upon induction of hydrolytic enzyme production. Journal of Proteome Research, 15(2), 457-467. DOI: 10.1021/acs.jproteome.5b00796 [details]
- Vehmas, A. P., Adam, M., Laajala, T. D., Kastenmüller, G., Prehn, C., Rozman, J., ... Strauss, L. (2016). Liver lipid metabolism is altered by increased circulating estrogen to androgen ratio in male mouse. Journal of Proteomics, 133, 66-75. DOI: 10.1016/j.jprot.2015.12.009 [details]
- Vuorijoki, L., Isojärvi, J., Kallio, P., Kouvonen, P., Aro, E. M., Corthals, G. L., ... Muth-Pawlak, D. (2016). Development of a quantitative SRM-based proteomics method to study iron metabolism of Synechocystis sp PCC 6803. Journal of Proteome Research, 15(1), 266-279. DOI: 10.1021/acs.jproteome.5b00800 [details]
2015
- Kauko, O., Laajala, T. D., Jumppanen, M., Hintsanen, P., Suni, V., Haapaniemi, P., ... Imanishi, S. Y. (2015). Label-free quantitative phosphoproteomics with novel pairwise abundance normalization reveals synergistic RAS and CIP2A signaling. Scientific Reports, 5, [13099]. https://doi.org/10.1038/srep13099 [details]
- McDonnell, L. A., Römpp, A., Balluff, B., Heeren, R. M. A., Albar, J. P., Andrén, P. E., ... Stoeckli, M. (2015). Discussion point: reporting guidelines for mass spectrometry imaging. Analytical and Bioanalytical Chemistry, 407(8), 2035-2045. DOI: 10.1007/s00216-014-8322-6 [details]
- Pursiheimo, A., Vehmas, A. P., Afzal, S., Suomi, T., Chand, T., Strauss, L., ... Elo, L. L. (2015). Optimization of statistical methods impact on quantitative proteomics data. Journal of Proteome Research, 14(10), 4118-4126. DOI: 10.1021/acs.jproteome.5b00183 [details]
- Suni, V., Imanishi, S. Y., Maiolica, A., Aebersold, R., & Corthals, G. L. (2015). Confident Site Localization Using a Simulated Phosphopeptide Spectral Library. Journal of Proteome Research, 14(5), 2348-2359. DOI: 10.1021/acs.jproteome.5b00050 [details]
- Suomi, T., Corthals, G. L., Nevalainen, O. S., & Elo, L. L. (2015). Using peptide-level proteomics data for detecting differentially expressed proteins. Journal of Proteome Research, 14(11), 4564-4570. DOI: 10.1021/acs.jproteome.5b00363 [details]
2014
- Kannaste, O., Suomi, T., Salmi, J., Uusipaikka, E., Nevalainen, O., & Corthals, G. L. (2014). Cross-Correlation of Spectral Count Ranking to Validate Quantitative Proteome Measurements. Journal of Proteome Research, 13(4), 1957-1968. DOI: 10.1021/pr401096z [details]
2018
- Keune, K., Baij, C. L. M., Hermans, J. J., Astefanei, A., Groenewegen, H., Brinkhuis, F., ... Iedema, P. D. (2018). Tailored model systems revealing the impact of cleaning: a comparative study on different methods of solvent application. Poster session presented at NANORESTART, Gothenburg, Denmark.
Prijs
- Goswami, M. & Corthals, G. L. (2018). 10,000 euro project grant from the Amsterdam University Fund for development of an educational tool concerning 'The Story of Proteomics'.
This list of publications is extracted from the UvA-Current Research Information System. Questions? Ask the library or the Pure staff of your faculty / institute. Log in to Pure to edit your publications. Log in to Personal Page Publication Selection tool to manage the visibility of your publications on this list. -
Nevenwerkzaamheden
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Maastricht University
Onderzoek, clinisch/medisch
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Maastricht University
Suni, V., Suomi, T., Tsubosaka, T., Imanishi, S. Y., Elo, L. L., & Corthals, G. L. (2018). SimPhospho: a software tool enabling confident phosphosite assignment. Bioinformatics, 34(15), 2690-2692. DOI: