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dhr. dr. D. (David) Dubbeldam

Faculteit der Natuurwetenschappen, Wiskunde en Informatica
Van 't Hoff Institute for Molecular Sciences
Fotograaf: Bob Bronshoff

Bezoekadres
  • Science Park 904
  • Kamernummer: C2.233
Postadres
  • Postbus 94157
    1090 GD Amsterdam
Contactgegevens
  • Profiel

    Biografie

    David Dubbeldam werd geboren in Krimpen a / d Lek. Hij behaalde een BSE en PhD aan de Universiteit van Amsterdam, respectievelijk in informatica en computationele chemie. Hij voltooide zijn afstudeerwerk onder leiding van Prof. Dr. Ir. B. Smit en werkte met Prof. R.Q. Snurr tijdens zijn postdoctorale studie. Momenteel werkt hij als universitair hoofddocent en VIDI-laureaat aan de Universiteit van Amsterdam in de computationele chemiegroep. In 2011 ontving hij de prestigieuze NWO VIDI-subsidie ​​(1 miljoen euro) voor een periode van 5 jaar om een ​​groep op te zetten die werkt aan het ontwerpen en modelleren van metaal-organische kaders. Zijn groep heeft de simulatiecode RASPA (een Monte-Carlo, Molecular Dynamics en optimalisatiecode) en de macOS-visualisatie-app iRASPA ontwikkeld.

    Onderzoeksinteresses

    Mijn onderzoek richt zich in grote lijnen op het ontwerp en de modellering van multifunctionele poreuze materialen van de volgende generatie met moleculespecifieke eigenschappen voor adsorptietoepassingen. Doeltoepassingen zijn onder meer adsorptiescheidingen, luchtzuivering, afvang van koolstofdioxide, energieopslag, chemische detectie en katalyse. Ik focus op het ontwikkelen van nieuwe verbeterde materialen maar ook op het ophelderen van de fysische processen op moleculair niveau. Force field en methode-ontwikkeling zijn belangrijke aspecten om de simulaties efficiënt, betrouwbaar en voorspellend te maken.

  • In het nieuws
    • Dec. 2019, Faculteit/Instituut Nieuwsbrief, Nature Chemistry artikel "Loading-dependent water effects on the structural properties of water stable MOFs", link
    • 24 Sept. 2019, Faculteit/Instituut Nieuwsbrief: "Negative thermal expansion design strategies in metal-organic frameworks", web-link
    • 24 Sept. 2019, AlphaGalileo: "Negative thermal expansion design strategies in metal-organic frameworks", web-link
    • 1 Juli 2019, AlphaGalileo: "Looking at leaves: enhancing the performance of MOF materals", web-link
    • 26 Juni 2019, Instituut Nieuwsbrief: "Looking at leaves: enhancing the performance of MOF materials", web-link
    • Jan. 2019, Faculteit/Instituut Nieuwsbrief: "Successful International Winter School MolSim-2019", web-link 
    • 28 Febr. 2018, iRASPA op SklogWiki, the open-edit encyclopedia dedicated to thermodynamics and statistical mechanics: web-link 
    • 29 Maart 2018, Folia wetenschap: "Chemicus maakt app om moleculen in 3D te analyseren" door Marleen Hoebe, Folia-link 
    • 30 Maart 2018, Macs in Chemistry artikel: "iRASPA: GPU-accelerated visualization software for materials scientists", Article-link 
    • Maart 2018, Instituut Nieuwsbrief: "Sophisticated free app for molecular visualization", web-link 
    • 28 Maart 2018, Emmerce, Industry Wire, "Uitgebreide gratis app voor moleculaire visualisatie", web-link 
    • 12 April 2018, Delft Nieuwsbrief: "Geavanceerde gratis app iRASPA voor moleculaire visualisatie", web-link 
    • Mei 2016, Faculteit/Instituut Nieuwsbrief: "Cum Laude PhD defence Ariana Torres Knoop", web-link 
  • iRASPA

    iRASPA is een visualisatiepakket (met bewerkingsmogelijkheden) gericht op materiaalkunde. Voorbeelden van materialen zijn metalen, metaaloxiden, keramiek, biomaterialen, zeolieten, kleien en metaal-organische kaders. iRASPA is exclusief voor macOS en kan als zodanig gebruikmaken van de nieuwste visualisatietechnologieën met verbluffende prestaties. iRASPA maakt uitgebreid gebruik van GPU-computing. Leegte-fracties en oppervlakken kunnen bijvoorbeeld worden berekend in een fractie van een seconde voor kleine / middelgrote structuren en in een paar seconden voor zeer grote eenheidscellen. Het kan grote structuren (honderdduizenden atomen) aan, inclusief omgevingsocclusie, met hoge framesnelheden.

    Screenshot van iRASPA.

    links:

    iRASPA website

    Artikel in het vakblad Molecular Simulation (Open access)

  • RASPA

    RASPA is een softwarepakket voor het simuleren van adsorptie en diffusie van moleculen in flexibele nanoporeuze materialen. De code implementeert de nieuwste state-of-the-art algoritmen voor Molecular Dynamics en Monte Carlo in verschillende ensembles waaronder symplectische / maatregelbehoudende integrators, Ewald-sommatie, Configurational-Bias Monte Carlo, Continuous Fractional Component Monte Carlo, Reactive Monte Carlo, en Baker's minimalisatie. Toepassingen van RASPA zijn onder andere co-existentie-eigenschappen, adsorptie-isothermen voor enkele en meerdere componenten, zelf- en collectieve diffusiviteiten, reactiesystemen en visualisatie.

    Na 10 jaar ontwikkeling is de software nu vrijgegeven onder de GNU General Public License in 2016 (D. Dubbeldam, S. Calero, D.E. Ellis, R.Q. Snurr, Mol. Simulat. 2016). Het pakket wordt nu gebruikt door meer dan 30 onderzoeksgroepen en instellingen, waaronder groepen aan de Universiteit van Amsterdam, de Technische Universiteit Delft, Georgia Tech (Atlanta, VS), Northwestern University (Evanston, VS), Shell (Amsterdam) en CSIRO (Melbourne, Australië).

    Credits: RASPA is gecreëerd door David Dubbeldam (Universiteit van Amsterdam, Nederland), Sofia Calero (Universiteit Pablo de Olavide, Sevilla, Spanje), Thijs Vlugt (Technische Universiteit Delft, Nederland) en Randall Q. Snurr (Noordwestelijk University, Evanston, VS).

    Mixture xylene isothermen in MAF-X8 berekend met RASPA.

    links:

    RASPA github

    Artikel in het vak-blad Molecular Simulation (Open access)

  • Recensie artikelen and boek-hoofdstukken
  • Begeleide proefschriften
    • 16 April 2020, Ahmadreza Rahbari, "Thermodynamica of Industrially Relevant Systems: Method Devopment and Applications", link
    • 13 Dec. 2019, Tim Becker, "Molecular Simulations of Tunable Materials: Metal-Organic Frameworks & Ionic Liquids, Theory & Application"
    • 25 Febr. 2019, Ali Poursaidesfahani, "Zeolite-based separation and production of branched alkanes", link
    • 16 Okt. 2018, Jurn Heinen, "Multiscale modeling of metal-organic frameworks", link
    • 23 Maart 2018, Salvador R.G. Balestra, "Atomistic Insights into Flexibility of Nanoporous Materials", link
    • 28 April 2016, Ariana Torres-Knoop (cum laude), "Entropy driven separations in nanoporous materials", link
    • 23 Nov. 2015, Sayee Prasaad Balaji,  "Absorption of Greenhouse Gases in Liquids: A Molecular Approach", link
    • 11 Juli 2013, Juan-Jose Guiterrez-Sevillano, "Computational techniques applied to the study and development of nanoporous materials", link
  • Publicaties

    2020

    • Martin-Calvo, A., Jose Gutierrez-Sevillano, J., Dubbeldam, D., & Calero, S. (2020). Using Aliphatic Alcohols to Tune Benzene Adsorption in MAF-6 (vol 2, 1900112, 2019). Advanced Theory and Simulations, 3(1). https://doi.org/10.1002/adts.201900224

    2019

    2018

    2017

    2016

    • Balestra, S. R. G., Bueno-Perez, R., Hamad, S., Dubbeldam, D., Ruiz-Salvador, A. R., & Calero, S. (2016). Controlling Thermal Expansion: A Metal-Organic Frameworks Route. Chemistry of Materials, 28(22), 8296-8304. https://doi.org/10.1021/acs.chemmater.6b03457 [details]
    • Becker, T. M., Dubbeldam, D., Lin, L-C., & Vlugt, T. J. H. (2016). Investigating polarization effects of CO2 adsorption in MgMOF-74. Journal of Computational Science, 15, 86-94. https://doi.org/10.1016/j.jocs.2015.08.010
    • Dubbeldam, D., Calero, S., Ellis, D. E., & Snurr, R. Q. (2016). RASPA: molecular simulation software for adsorption and diffusion in flexible nanoporous materials. Molecular Simulation, 42(2), 81-101. https://doi.org/10.1080/08927022.2015.1010082 [details]
    • Heinen, J., & Dubbeldam, D. (2016). Understanding and solving disorder in the substitution pattern of amino functionalized MIL-47(V). Dalton Transactions, 45(10), 4309-4315. https://doi.org/10.1039/c5dt03399c [details]
    • Heinen, J., Burtch, N. C., Walton, K. S., Guerra, C. F., & Dubbeldam, D. (2016). Predicting Multicomponent Adsorption Isotherms in Open-Metal Site Materials Using Force Field Calculations Based on Energy Decomposed Density Functional Theory. CHEMISTRY-A EUROPEAN JOURNAL, 22(50), 18045-18050. https://doi.org/10.1002/chem.201603895
    • Poursaeidesfahani, A., Torres-Knoop, A., Dubbeldam, D., & Vlugt, T. J. H. (2016). Direct Free Energy Calculation in the Continuous Fractional Component Gibbs Ensemble. Journal of Chemical Theory and Computation, 12(4), 1481-1490. https://doi.org/10.1021/acs.jctc.5b01230 [details]
    • Poursaeidesfahani, A., Torres-Knoop, A., Rigutto, M., Nair, N., Dubbeldam, D., & Vlugt, T. J. H. (2016). Computation of the heat and entropy of adsorption in proximity of inflection points. The Journal of Physical Chemistry. C, 120(3), 1727-1738. https://doi.org/10.1021/acs.jpcc.5b11606 [details]
    • Ramdin, M., Balaji, S. P., Vicent-Luna, J. M., Torres-Knoop, A., Chen, Q., Dubbeldam, D., ... Vlugt, T. J. H. (2016). Computing bubble-points of CO2/CH4 gas mixtures in ionic liquids from Monte Carlo simulations. Fluid Phase Equilibria, 418, 100-107. https://doi.org/10.1016/j.fluid.2015.09.041 [details]
    • Ramdin, M., Chen, Q., Balaji, S. P., Manuel Vicent-Luna, J., Torres-Knoop, A., Dubbeldam, D., ... Vlugt, T. J. H. (2016). Solubilities of CO2, CH4, C2H6, and SO2 in ionic liquids and Selexol from Monte Carlo simulations. Journal of Computational Science, 15, 74-80. https://doi.org/10.1016/j.jocs.2015.09.002
    • Torres-Knoop, A., Burtch, N. C., Poursaeidesfahani, A., Balaji, S. P., Kools, R., Smit, F. X., ... Dubbeldam, D. (2016). Optimization of Particle Transfers in the Gibbs Ensemble for Systems with Strong and Directional Interactions Using CBMC, CFCMC, and CB/CFCMC. The Journal of Physical Chemistry. C, 120(17), 9148-9159. https://doi.org/10.1021/acs.jpcc.5b11607
    • Vicent-Luna, J. M., Dubbeldam, D., Gómez-Álvarez, P., & Calero, S. (2016). Aqueous solutions of ionic liquids: microscopic assembly. ChemPhysChem, 17(3), 380-386. https://doi.org/10.1002/cphc.201501022 [details]

    2015

    • Balaji, S. P., Gangarapu, S., Ramdin, M., Torres-Knoop, A., Zuilhof, H., Goetheer, E. L. V., ... Vlugt, T. J. H. (2015). Simulating the Reactions of CO2 in Aqueous Monoethanolamine Solution by Reaction Ensemble Monte Carlo Using the Continuous Fractional Component Method. Journal of Chemical Theory and Computation, 11(6), 2661-2669. https://doi.org/10.1021/acs.jctc.5b00160 [details]
    • Balestra, S. R. G., Hamad, S., Ruiz-Salvador, A. R., Domínguez-García, V., Merkling, P. J., Dubbeldam, D., & Calero, S. (2015). Understanding nanopore window distortions in the reversible molecular valve zeolite RHO. Chemistry of Materials, 27(16), 5657-5667. https://doi.org/10.1021/acs.chemmater.5b02103 [details]
    • Bueno-Perez, R., Gutiérrez-Sevillano, J. J., Dubbeldam, D., Merkling, P. J., & Calero, S. (2015). Separation of amyl alcohol isomers in ZIF-77. ChemPhysChem, 16(13), 2735-2738. https://doi.org/10.1002/cphc.201500319 [details]
    • Burtch, N. C., Dubbeldam, D., & Walton, K. S. (2015). Investigating water and framework dynamics in pillared MOFs. Molecular Simulation, 41(16-17), 1379-1387. https://doi.org/10.1080/08927022.2015.1030861
    • Burtch, N. C., Torres-Knoop, A., Foo, G. S., Leisen, J., Sievers, C., Ensing, B., ... Walton, K. S. (2015). Understanding DABCO Nanorotor Dynamics in Isostructural Metal-Organic Frameworks. The Journal of Physical Chemistry Letters, 6(5), 812-816. https://doi.org/10.1021/jz502653y [details]
    • Luna-Triguero, A., Vicent-Luna, J. M., Dubbeldam, D., Gómez-Álvarez, P., & Calero, S. (2015). Understanding and Exploiting Window Effects for Adsorption and Separations of Hydrocarbons. The Journal of Physical Chemistry. C, 119(33), 19236-19243. https://doi.org/10.1021/acs.jpcc.5b05597 [details]
    • Ramdin, M., Balaji, S. P., Torres-Knoop, A., Dubbeldam, D., de Loos, T. W., & Vlugt, T. J. H. (2015). Solubility of natural gas species in ionic liquids and commercial solvents: experiments and Monte Carlo simulations. Journal of Chemical and Engineering Data, 60(10), 3039-3045. https://doi.org/10.1021/acs.jced.5b00469 [details]
    • Torres-Knoop, A., & Dubbeldam, D. (2015). Exploiting large-pore metal-organic frameworks for separations through entropic molecular mechanisms. ChemPhysChem, 16(10), 2046-2067. https://doi.org/10.1002/cphc.201500195 [details]
    • Torres-Knoop, A., Balestra, S. R. G., Krishna, R., Calero, S., & Dubbeldam, D. (2015). Entropic Separations of Mixtures of Aromatics by Selective Face-to-Face Molecular Stacking in One-Dimensional Channels of Metal-Organic Frameworks and Zeolites. ChemPhysChem, 16(3), 532-535. https://doi.org/10.1002/cphc.201402819 [details]
    • Torres-Knoop, A., Heinen, J., Krishna, R., & Dubbeldam, D. (2015). Entropic Separation of Styrene/Ethylbenzene Mixtures by Exploitation of Subtle Differences in Molecular Configurations in Ordered Crystalline Nanoporous Adsorbents. Langmuir, 31(12), 3771-3778. https://doi.org/10.1021/acs.langmuir.5b00363 [details]

    2014

    2013

    2012

    • Bueno-Perez, R., Calero, S., Dubbeldam, D., Ania, C. O., Parra, J. B., Zaderenko, A. P., & Merkling, P. J. (2012). Zeolite force fields and experimental siliceous frameworks in a comparative infrared study. The Journal of Physical Chemistry. C, 116(49), 25797-25805. https://doi.org/10.1021/jp307972r [details]
    • Cannon, J. J., Vlugt, T. J. H., Dubbeldam, D., Maruyama, S., & Shiomi, J. (2012). A simulation study on the adsorption properties of linear alkanes on closed nanotube bundles. The journal of Physical Chemistry. B, 116(32), 9812-9819. https://doi.org/10.1021/jp3039225 [details]
    • Dubbeldam, D., Krishna, R., Calero, S., & Yazaydın, A. Ö. (2012). Computer-assisted screening of ordered crystalline nanoporous adsorbents for separation of alkane isomers. Angewandte Chemie, International Edition, 51(47), 11867-11871. https://doi.org/10.1002/anie.201205040, https://doi.org/10.1002/ange.201205040
    • Dubbeldam, D., Krishna, R., Calero, S., & Yazaydın, A. Ö. (2012). Computer-assisted screening of ordered crystalline nanoporous adsorbents for separation of alkane isomers. Angewandte Chemie, 124, 12037-12041. https://doi.org/10.1002/ange.201205040, https://doi.org/10.1002/anie.201205040
    • Ford, D. C., Dubbeldam, D., Snurr, R. Q., Kuenzel, V., Wehring, M., Stallmach, F., ... Mueller, U. (2012). Self-diffusion of chain molecules in the metal-organic framework IRMOF-1: simulation and experiment. The Journal of Physical Chemistry Letters, 3(7), 930-933. https://doi.org/10.1021/jz300141n [details]
    • Thornton, A. W., Dubbeldam, D., Liu, M. S., Ladewig, B. P., Hill, A. J., & Hill, M. R. (2012). Feasibility of zeolitic imidazolate framework membranes for clean energy applications. Energy & Environmental Science, 5(6), 7637-7646. https://doi.org/10.1039/c2ee21743k [details]

    2011

    • Garcia-Perez, E., Schnell, S. K., Castillo, J. M., Calero, S., Kjelstrup, S., Dubbeldam, D., & Vlugt, T. J. H. (2011). External surface adsorption on silicalite-1 zeolite studied by molecular simulation. The Journal of Physical Chemistry. C, 115(31), 15355-15360. https://doi.org/10.1021/jp201570z [details]
    • Gutiérrez-Sevillano, J. J., Caro-Pérez, A., Dubbeldam, D., & Calero, S. (2011). Molecular simulation investigation into the performance of Cu-BTC metal-organic frameworks for carbon dioxide-methane separations. Physical Chemistry Chemical Physics, 13(45), 20453-20460. https://doi.org/10.1039/c1cp21761e [details]
    • Oxford, G. A. E., Dubbeldam, D., Broadbelt, L. J., & Snurr, R. Q. (2011). Elucidating steric effects on enantioselective epoxidation catalyzed by (salen)Mn in metal-organic frameworks. Journal of Molecular Catalysis A-Chemical, 334(1-2), 89-97. https://doi.org/10.1016/j.molcata.2010.11.001 [details]

    2010

    • Caremans, T. P., van Erp, T. S., Dubbeldam, D., Castillo, J. M., Martens, J. A., & Calero, S. (2010). Enantioselective adsorption characteristics of aluminum-substituted MFI zeolites. Chemistry of Materials, 22(16), 4591-4601. https://doi.org/10.1021/cm100672u [details]
    • Castillo, J. M., Vlugt, T. J. H., Dubbeldam, D., Hamad, S., & Calero, S. (2010). Performance of chiral zeolites for enantiomeric separation revealed by molecular simulation. The Journal of Physical Chemistry. C, 114(50), 22207-22213. https://doi.org/10.1021/jp1079394 [details]
    • Dubbeldam, D., Oxford, G. A. E., Krishna, R., Broadbelt, L. J., & Snurr, R. Q. (2010). Distance and angular holonomic constraints in molecular simulations. Journal of Chemical Physics, 133(3), 034114. https://doi.org/10.1063/1.3429610 [details]
    • García-Sánchez, A., Dubbeldam, D., & Calero, S. (2010). Modeling adsorption and self-diffusion of methane in LTA zeolites: the influence of framework flexibility. The Journal of Physical Chemistry. C, 114(35), 15068-15074. https://doi.org/10.1021/jp1059215 [details]
    • Gutiérrez-Sevillano, J. J., Dubbeldam, D., Rey, F., Valencia, S., Palomino, M., Martín-Calvo, A., & Calero, S. (2010). Analysis of the ITQ-12 zeolite performance in propane-propylene separations using a combination of experiments and molecular simulations. The Journal of Physical Chemistry. C, 114(35), 14907-14914. https://doi.org/10.1021/jp101744k [details]
    • Kuhn, J., Castillo-Sanchez, J. M., Gascon, J., Calero, S., Dubbeldam, D., Vlugt, T. J. H., ... Gross, J. (2010). Adsorption and diffusion of water, methanol, and ethanol in all-silica DD3R: experiments and simulations [correction to vol. 113, p. 14290, 2009]. The Journal of Physical Chemistry. C, 114(14), 6877-6878. https://doi.org/10.1021/jp101882c
    • Snurr, R. Q., Yazaydin, A. Ö., Dubbeldam, D., & Frost, H. (2010). Molecular modeling of adsorption and diffusion in metal-organic frameworks. In L. R. MacGillivray (Ed.), Metal-organic frameworks: design and application (pp. 313-339). Hoboken, NJ: Wiley. https://doi.org/10.1002/9780470606858.ch11 [details]
    • Vlugt, T. J. H., van den Bergh, J., Dubbeldam, D., & Kapteijn, F. (2010). Reconciling the Relevant Site Model and dynamically corrected Transition State Theory. Chemical Physics Letters, 495(1-3), 77-79. https://doi.org/10.1016/j.cplett.2010.06.047 [details]
    • Wehring, M., Gascon, J., Dubbeldam, D., Kapteijn, F., Snurr, R. Q., & Stallmach, F. (2010). Self-diffusion studies in CuBTC by PFG NMR and MD simulations. The Journal of Physical Chemistry. C, 114(23), 10527-10534. https://doi.org/10.1021/jp102212w [details]
    • van Erp, T. S., Caremans, T. P., Dubbeldam, D., Martin-Calvo, A., Calero, S., & Martens, J. A. (2010). Enantioselective adsorption in achiral zeolites. Angewandte Chemie, International Edition, 49(17), 3010-3013. https://doi.org/10.1002/anie.200906083, https://doi.org/10.1002/ange.200906083
    • van Erp, T. S., Caremans, T. P., Dubbeldam, D., Martin-Calvo, A., Calero, S., & Martens, J. A. (2010). Enantioselective adsorption in achiral zeolites. Angewandte Chemie, 122, 3074-3077. https://doi.org/10.1002/ange.200906083, https://doi.org/10.1002/anie.200906083
    • van Erp, T. S., Dubbeldam, D., Calero, S., & Martens, J. A. (2010). On the application of chiral amplification via adsorption. Chemical Engineering Science, 65(24), 6478-6485. https://doi.org/10.1016/j.ces.2010.10.003 [details]
    • van Erp, T. S., Dubbeldam, D., Caremans, T. P., Calero, S., & Martens, J. A. (2010). Effective Monte Carlo scheme for multicomponent gas adsorption and enantioselectivity in nanoporous materials. The Journal of Physical Chemistry Letters, 1(14), 2154-2158. https://doi.org/10.1021/jz100479p [details]

    2009

    • Bae, Y-S., Dubbeldam, D., Nelson, A., Walton, K. S., Hupp, J. T., & Snurr, R. Q. (2009). Strategies for Characterization of Large-Pore Metal-Organic Frameworks by Combined Experimental and Computational Methods. Chemistry of Materials, 21(20), 4768-4777. https://doi.org/10.1021/cm803218f
    • Castillo, J. M., Dubbeldam, D., Vlugt, T. J. H., Smit, B., & Calero, S. (2009). Evaluation of various water models for simulation of adsorption in hydrophobic zeolites. Molecular Simulation, 35(12-13), 1067-1076. https://doi.org/10.1080/08927020902865923
    • Dubbeldam, D., Ford, D. C., Ellis, D. E., & Snurr, R. Q. (2009). A new perspective on the order-n algorithm for computing correlation functions. Molecular Simulation, 35(12-13), 1084-1097. https://doi.org/10.1080/08927020902818039
    • Dubbeldam, D., Krishna, R., & Snurr, R. Q. (2009). Method for analyzing structural changes of flexible metal-organic frameworks induced by adsorbates. The Journal of Physical Chemistry. C, 113(44), 19317-19327. https://doi.org/10.1021/jp906635f [details]
    • Farrusseng, D., Daniel, C., Gaudillere, C., Ravon, U., Schuurman, Y., Mirodatos, C., ... Snurr, R. Q. (2009). Heats of Adsorption for Seven Gases in Three Metal-Organic Frameworks: Systematic Comparison of Experiment and Simulation. Langmuir, 25(13), 7383-7388. https://doi.org/10.1021/la900283t
    • García-Sánchez, A., Ania, C. O., Parra, J. B., Dubbeldam, D., Vlugt, T. J. H., Krishna, R., & Calero, S. (2009). Transferable force field for carbon dioxide adsorption in zeolites. The Journal of Physical Chemistry. C, 113(20), 8814-8820. https://doi.org/10.1021/jp810871f [details]
    • Kuhn, J., Castillo-Sanchez, J. M., Gascon, J., Calero, S., Dubbeldam, D., Vlugt, T. J. H., ... Gross, J. (2009). Adsorption and Diffusion of Water, Methanol, and Ethanol in All-Silica DD3R: Experiments and Simulation. The Journal of Physical Chemistry. C, 113(32), 14290-14301. https://doi.org/10.1021/jp901869d

    2008

    • Dubbeldam, D., Galvin, C. J., Walton, K. S., Ellis, D. E., & Snurr, R. Q. (2008). Separation and molecular-level segregation of complex alkane mixtures in metal-organic frameworks. Journal of the American Chemical Society, 130(33), 10884-+. https://doi.org/10.1021/ja804039c
    • Garcia-Perez, E., Parra, J. B., Ania, C. O., Dubbeldam, D., Vlugt, T. J. H., Castillo, J. M., ... Calero, S. (2008). Unraveling the argon adsorption processes in MFI-type zeolite. The Journal of Physical Chemistry. C, 112(27), 9976-9979. https://doi.org/10.1021/jp803753h
    • Vlugt, T. J. H., Garcia-Perez, E., Dubbeldam, D., Ban, S., & Calero, S. (2008). Computing the heat of adsorption using molecular simulations: The effect of strong Coulombic interactions. Journal of Chemical Theory and Computation, 4(7), 1107-1118. https://doi.org/10.1021/ct700342k
    • Walton, K. S., Millward, A. R., Dubbeldam, D., Frost, H., Low, J. J., Yaghi, O. M., & Snurr, R. Q. (2008). Understanding inflections and steps in carbon dioxide adsorption isotherms in metal-organic frameworks. Journal of the American Chemical Society, 130(2), 406-+. https://doi.org/10.1021/ja076595g

    2007

    • Dubbeldam, D., & Snurr, R. Q. (2007). Recent developments in the molecular modeling of diffusion in nanoporous materials. Molecular Simulation, 33(4-5), 305-325. https://doi.org/10.1080/08927020601156418
    • Dubbeldam, D., Frost, H., Walton, K. S., & Snurr, R. Q. (2007). Molecular simulation of adsorption sites of light gases in the metal-organic framework IRMOF-1. Fluid Phase Equilibria, 261(1-2), 152-161. https://doi.org/10.1016/j.fluid.2007.07.042
    • Dubbeldam, D., Walton, K. S., Ellis, D. E., & Snurr, R. Q. (2007). Exceptional negative thermal expansion in isoreticular metal-organic frameworks. Angewandte Chemie, International Edition, 46(24), 4496-4499. https://doi.org/10.1002/anie.200700218, https://doi.org/10.1002/ange.200700218
    • Garcia-Perez, E., Dubbeldam, D., Liu, B., Smit, B., & Calero, S. (2007). A computational method to characterize framework aluminum in aluminosilicates. Angewandte Chemie, International Edition, 46(1&2), 276-278. https://doi.org/10.1002/anie.200603136 [details]
    • Garcia-Perez, E., Parra, J. B., Ania, C. O., García-Sánchez, A., van Baten, J. M., Krishna, R., ... Calero, S. (2007). A computational study of CO2, N2, and CH4 adsorption in zeolites. Adsorption, 13(5-6), 469-476. https://doi.org/10.1007/s10450-007-9039-z [details]
    • Garcia-Sanchez, A., Garcia-Perez, E., Dubbeldam, D., Krishna, R., & Calero, S. (2007). A simulation study of alkanes in Linde Type A zeolites. Adsorption Science & Technology, 25(6), 417-427.
    • Liu, B., Garcia-Perez, E., Dubbeldam, D., Smit, B., & Calero, S. (2007). Understanding Aluminum Location and Non-framework Ions Effects on Alkane Adsorption in Aluminosilicates: A Molecular Simulation Study. The Journal of Physical Chemistry. C, 111(28), 10419-10426. https://doi.org/10.1021/jp0683521 [details]

    2006

    • Beerdsen, E., Dubbeldam, D., & Smit, B. (2006). Loading Dependence of the Diffusion Coefficient of Methane in Nanoporous Materials. The journal of Physical Chemistry. B, 110(45), 22754-22772. https://doi.org/10.1021/jp0641278 [details]
    • Beerdsen, E., Dubbeldam, D., & Smit, B. (2006). Understanding Diffusion in Nanoporous Materials. Physical Review Letters, 96, 044501-044501. [details]
    • Calero, S., Lobato, M. D., Garcia-Perez, E., Mejias, J. A., Lago, S., Vlugt, T. J. H., ... Dubbeldam, D. (2006). A coarse-graining approach for the proton complex in protonated aluminosilicates. The journal of Physical Chemistry. B, 110(12), 5838-5841. https://doi.org/10.1021/jp060174o [details]
    • Dubbeldam, D., Beerdsen, E., Calero, S., & Smit, B. (2006). Dynamically Corrected Transition State Theory Calculations of Self-Diffusion in Anisotropic Nanoporous Materials. The journal of Physical Chemistry. B, 110, 3164-3172. https://doi.org/10.1021/jp0542470 [details]
    • Garcia-Perez, E., Dubbeldam, D., Maesen, T. L. M., & Calero, S. (2006). Influence of cation Na/Ca ratio on adsorption in LTA 5A: A systematic molecular simulation study of alkane chain length. The journal of Physical Chemistry. B, 110(47), 23968-23976. https://doi.org/10.1021/jp064971y
    • Maesen, T. L. M., Beerdsen, E., Calero, S., Dubbeldam, D., & Smit, B. (2006). Understanding cage effects in the n-alkane conversion on zeolites. Journal of Catalysis, 237(2), 278-290. https://doi.org/10.1016/j.jcat.2005.11.007 [details]

    2005

    • Beerdsen, E., Dubbeldam, D., & Smit, B. (2005). Molecular Understanding of Diffusion in Confinement. Physical Review Letters, 95(16), 164505/1-164505/4. [details]
    • Dubbeldam, D., Beerdsen, E., Calero, S., & Smit, B. (2005). Molecular path control in zeolite membranes. Proceedings of the National Academy of Sciences of the United States of America, 102(35), 12317-12320. https://doi.org/10.1073/pnas.0503908102 [details]
    • Dubbeldam, D., Beerdsen, E., Vlugt, T. J. H., & Smit, B. (2005). Molecular simulation of loading-dependent diffusion in nanoporous materials using extended dynamically corrected transition state theory. Journal of Chemical Physics, 122(22), 224712/1-224712/17. [details]
    • Garcia-Perez, E., Torrens, I. M., Lago, S., Dubbeldam, D., Vlugt, T. J. H., Maesen, T. L. M., ... Calero, S. (2005). Elucidating alkane adsorption in sodium-exchanged zeolites from molecular simulations to empirical equations. Applied Surface Science, 252(3), 716-722. https://doi.org/10.1016/j.apsusc.2005.02.103 [details]

    2004

    • Beerdsen, E., Smit, B., & Dubbeldam, D. (2004). Molecular Simulation of Loading Dependent Slow Diffusion in Confined Systems. Physical Review Letters, 93(24), 248301/1-248301/4. [details]
    • Calero, S., Dubbeldam, D., Krishna, R., Smit, B., Vlugt, T. J. H., Denayer, J. F. M., ... Maesen, T. L. M. (2004). Understanding the Role of Sodium during Adsorption: A Force Field for Alkanes in Sodium-Exchanged Faujasites. Journal of the American Chemical Society, 126(36), 11377-11386. https://doi.org/10.1021/ja0476056 [details]
    • Calero, S., Schenk, M., Dubbeldam, D., Maesen, T. L. M., & Smit, B. (2004). The selectivity of n-hexane hydroconversion on MOR-, MAZ-, and FAU-type zeolites. Journal of Catalysis, 228(1), 121-129. https://doi.org/10.1016/j.jcat.2004.08.019 [details]
    • Dubbeldam, D., Calero, S., Vlugt, T. J. H., Krishna, R., Maesen, T. L. M., & Smit, B. (2004). United Atom Force Field for Alkanes in Nanoporous Materials. The journal of Physical Chemistry. B, 108(33), 12301-12313. https://doi.org/10.1021/jp0376727 [details]
    • Dubbeldam, D., Calero, S., Vlugt, T. J. H., Krishna, R., Maesen, T. L. M., Beerdsen, E., & Smit, B. (2004). Force field parametrization through fitting on inflection points in isotherms. Physical Review Letters, 93(8), [088302]. [details]
    • Krishna, R., van Baten, J. M., & Dubbeldam, D. (2004). On the Inflection in the Concentration Dependence of the Maxwell-Stefan diffusivity of CF4 in MFI zeolite. The journal of Physical Chemistry. B, 108, 14820-14822. https://doi.org/10.1021/jp0465682 [details]

    2003

    • Beerdsen, E., Dubbeldam, D., Smit, B., Vlugt, T. J. H., & Calero Diaz, S. (2003). Simulating the Effect of Nonframework Cations on the Adsorption of Alkanes in MFI-type Zeolites. The journal of Physical Chemistry. B, 44, 12088-12096. [details]
    • Dubbeldam, D., & Smit, B. (2003). Computer Simulation of Incommensurate Diffusion in Zeolites: Understanding Window Effects. The journal of Physical Chemistry. B, 107(44), 12138-12152. https://doi.org/10.1021/jp035200m [details]
    • Dubbeldam, D., Calero Diaz, S., Maesen, T. L. M., & Smit, B. (2003). Incommensurate Diffusion in Confined Systems. Physical Review Letters, 90, 245901-1-245901-4. [details]
    • Dubbeldam, D., Calero Diaz, S., Maesen, T. L. M., & Smit, B. (2003). Understanding the Window Effect in Zeolite Catalysis. Angewandte Chemie, International Edition, 42, 3624-3626. https://doi.org/10.1002/anie.200351110

    2002

    2001

    • Blaak, R., & Dubbeldam, D. (2001). Boltzmann approximation of transport properties in thermal lattice gases. Physical Review E, 63, 1-12. [details]
    • Blaak, R., & Dubbeldam, D. (2001). Coupling of thermal and mass diffusion in regular binary thermal lattice gases. Physical Review E, 64, 1-4. [details]

    2000

    1999

    • Dubbeldam, D., Hoekstra, A. G., & Sloot, P. M. A. (1999). Computational aspects of multispecies lattice-gas automata. Lecture Notes in Computer Science, 1593, 339-349. [details]
    • Dubbeldam, D., Hoekstra, A. G., & Sloot, P. M. A. (1999). Computational aspects of multispecies lattice-gas automata. In J. Kaandorp, M. Boasson, J. F. M. Tonino, & M. G. Vosselman (Eds.), Proceedings of the fifth annual conference of the Advanced School for Computing and Imaging ASCI, June 15-17, 1999 (Vol. June 1999, pp. 267-273). Delft: ASCI. [details]

    2004

    • Dubbeldam, D., Maesen, T. L. M., & Smit, B. (2004). Reply to the Comment on "Computer Simulation of Incommensurate Diffusion in Zeolites: Understanding Window Effects". The journal of Physical Chemistry. B, 108(41), 16330. https://doi.org/10.1021/jp040487o [details]

    2003

    • Dubbeldam, D., Calero, S., Maesen, T. L. M., & Smit, B. (2003). Understanding the window effect in zeolite catalysis. Angewandte Chemie. International edition in English, 42(20), 3624-3626. [details]

    Mediaoptreden

    • Dubbeldam, D. & Heinen, J. (28-12-2019). Attention for research David Dubbeldam and Jurn Heinen in LongRoom news. Attention for research David Dubbeldam and Jurn Heinen in Phys.org and LongRoom News.
    • Tang, Y., Dubbeldam, D. & Grecea, S. (18-07-2019). Artificial leaf provides ideal support for adsorbing MO Materials Today. Artificial leaf provides ideal support for adsorbing MO.
    • Tang, Y., Dubbeldam, D. & Grecea, S. (01-07-2019). Enhancing the performance of metal-organic framework materials Phys Org. Enhancing the performance of metal-organic framework materials.
    • Dubbeldam, D. (29-03-2018). App voor moleculaire visualisatie. App voor moleculaire visualisatie.

    Andere

    • Dubbeldam, D. (participant) (1-7-2019 - 4-7-2019). EUROPE school and Erasmus Mundus Master 'Chemical Nanoengineering', Wroclow, Poland (organising a conference, workshop, ...).
    • Dubbeldam, D. (host) (15-10-2018). Nicholas Burtch (hosting a visitor).

    2005

    • Dubbeldam, D. (2005). Computer-simulation of adsorption and diffusion of hydrocarbons in zeolites. [details]
    This list of publications is extracted from the UvA-Current Research Information System. Questions? Ask the library or the Pure staff of your faculty / institute. Log in to Pure to edit your publications. Log in to Personal Page Publication Selection tool to manage the visibility of your publications on this list.
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