Dr. ir. P.F. (Paul) Fransz
Faculteit der Natuurwetenschappen, Wiskunde en Informatica
Swammerdam Institute for Life Sciences
Bezoekadres
- Science Park 904
Postadres
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Postbus 1212
1000 BE Amsterdam
Contactgegevens
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Publicaties
2024
Fuentes, R. R., Nieuwenhuis, R., Chouaref, J., Hesselink, T., van Dooijeweert, W., van den Broeck, H. C., Schijlen, E., Schouten, H. J., Bai, Y., Fransz, P., Stam, M., de Jong, H., Trivino, S. D., de Ridder, D., van Dijk, A. D. J., & Peters, S. A. (2024). A catalogue of recombination coldspots in interspecific tomato hybrids. PLOS Genetics, 20(7), Article e1011336. https://doi.org/10.1371/journal.pgen.1011336 [details]
2023
- Fransz, P., van de Belt, J., & de Jong, H. (2023). Extended DNA Fibers for High-Resolution Mapping. In Methods in Molecular Biology (pp. 351-363). (Methods in Molecular Biology; Vol. 2672). Humana Press Inc., 2007. https://doi.org/10.1007/978-1-0716-3226-0_22
- de Jong, H., van de Belt, J., & Fransz, P. (2023). Critical Steps in DAPI and FISH Imaging of Chromosome Spread Preparations. In T. Heitkam, & S. Garcia (Eds.), Plant Cytogenetics and Cytogenomics: Methods and Protocols (pp. 247-256). (Methods in Molecular Biology; Vol. 2672). Humana Press. https://doi.org/10.1007/978-1-0716-3226-0_15 [details]
2020
- Fuentes, R. R., Hesselink, T., Nieuwenhuis, R., Bakker, L., Schijlen, E., van Dooijeweert, W., Diaz Trivino, S., de Haan, J. R., Sanchez Perez, G., Zhang, X., Fransz, P., de Jong, H., van Dijk, A. D. J., de Ridder, D., & Peters, S. A. (2020). Meiotic recombination profiling of interspecific hybrid F1 tomato pollen by linked read sequencing. Plant Journal, 102(3), 480-492. Advance online publication. https://doi.org/10.1111/tpj.14640 [details]
- Santos, A. P., Gaudin, V., Mozgová, I., Pontvianne, F., Schubert, D., Tek, A. L., Dvořáčková, M., Liu, C., Fransz, P., Rosa, S., & Farrona, S. (2020). Tidying-up the plant nuclear space: Domains, functions, and dynamics. Journal of Experimental Botany, 71(17), 5160-5178. https://doi.org/10.1093/jxb/eraa282 [details]
- Schmidt, C., Fransz, P., Rönspies, M., Dreissig, S., Fuchs, J., Heckmann, S., Houben, A., & Puchta, H. (2020). Changing local recombination patterns in Arabidopsis by CRISPR/Cas mediated chromosome engineering. Nature Communications, 11, Article 4418. https://doi.org/10.1038/s41467-020-18277-z [details]
- de Maagd, R. A., Loonen, A., Chouaref, J., Pelé, A., Meijer-Dekens, F., Fransz, P., & Bai, Y. (2020). CRISPR/Cas inactivation of RECQ4 increases homeologous crossovers in an interspecific tomato hybrid. Plant Biotechnology Journal, 18(3), 805-813. https://doi.org/10.1111/pbi.13248 [details]
2019
- Del Prete, S., Molitor, A., Charif, D., Bessoltane, N., Soubigou-Taconnat, L., Guichard, C., Brunaud, V., Granier, F., Fransz, P., & Gaudin, V. (2019). Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction. BMC plant biology, 19, Article 135. https://doi.org/10.1186/s12870-019-1738-6 [details]
- Stam, M., Tark-Dame, M., & Fransz, P. (2019). 3D genome organization: a role for phase separation and loop extrusion? Current Opinion in Plant Biology, 48, 36-46. https://doi.org/10.1016/j.pbi.2019.03.008 [details]
2018
- Bey, T. D., Koini, M., & Fransz, P. (2018). Fluorescence In Situ Hybridization (FISH) and Immunolabeling on 3D Preserved Nuclei. In M. Bemer, & C. Baroux (Eds.), Plant Chromatin Dynamics: Methods and Protocols (pp. 467-480). (Methods in Molecular Biology; Vol. 1675). Humana Press. https://doi.org/10.1007/978-1-4939-7318-7_27 [details]
- Chouaref, J., de Boer, E., Fransz, P., & Stam, M. (2018). Protocol for Chromatin Immunoprecipitation of Meiotic-Stage-Specific Tomato Anthers. Current protocols in plant biology, 3(3), Article e20074. https://doi.org/10.1002/cppb.20074 [details]
2017
- Snoek, B. L., Pavlova, P., Tessadori, F., Peeters, A. J. M., Bourbousse, C., Barneche, F., de Jong, H., Fransz, P. F., & van Zanten, M. (2017). Genetic Dissection of Morphometric Traits Reveals That Phytochrome B Affects Nucleus Size and Heterochromatin Organization in Arabidopsis thaliana. G3 (Bethesda, Md.), 7(8), 2519-2531. https://doi.org/10.1534/g3.117.043539 [details]
2016
- Fransz, P., Linc, G., Lee, C-R., Alves Aflitos, S., Lasky, J. R., Toomajian, C., Ali, H., Peters, J., van Dam, P., Ji, X., Kuzak, M., Gerats, T., Schubert, I., Schneeberger, K., Colot, V., Martienssen, R., Koornneef, M., Nordborg, M., Juenger, T. E., ... Schranz, M. E. (2016). Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana. Plant Journal, 88(2), 159-178. Advance online publication. https://doi.org/10.1111/tpj.13262 [details]
2015
- Alves Aflitos, S., Sanchez-Perez, G., de Ridder, D., Fransz, P., Schranz, M. E., de Jong, H., & Peters, S. A. (2015). Introgression browser: high-throughput whole-genome SNP visualization. Plant Journal, 82(1), 174-182. Advance online publication. https://doi.org/10.1111/tpj.12800 [details]
- Batzenschlager, M., Lermontova, I., Schubert, V., Fuchs, J., Berr, A., Koini, M. A., Houlné, G., Herzog, E., Rutten, T., Alioua, A., Fransz, P., Schmit, A. C., & Chabouté, M. E. (2015). Arabidopsis MZT1 homologs GIP1 and GIP2 are essential for centromere architecture. Proceedings of the National Academy of Sciences of the United States of America, 112(28), 8656-8660. https://doi.org/10.1073/pnas.1506351112 [details]
- Bourbousse, C., Mestiri, I., Zabulon, G., Bourge, M., Formiggini, F., Koini, M. A., Brown, S. C., Fransz, P., Bowler, C., & Barneche, F. (2015). Light signaling controls nuclear architecture reorganization during seedling establishment. Proceedings of the National Academy of Sciences of the United States of America, 112(21), E2836-E2844. https://doi.org/10.1073/pnas.1503512112 [details]
2014
- Lysak, M. A., & Fransz, P. F. (2014). From transposon to chromosome and polyploidy. An update on cytogenetics and genomics of Arabidopsis. Chromosome Research, 22(2), 99-101. Advance online publication. https://doi.org/10.1007/s10577-014-9427-7 [details]
2013
- van Zanten, M., Tessadori, F., Peeters, A. J. M., & Fransz, P. (2013). Environment-Induced Chromatin Reorganisation and Plant Acclimation. In G. Grafi, & N. Ohad (Eds.), Epigenetic Memory and Control in Plants (pp. 21-40). (Signaling and Communication in Plants; Vol. 18). Springer. https://doi.org/10.1007/978-3-642-35227-0_2 [details]
2012
- Alcázar, R., Pecinka, A., Aarts, M. G., Fransz, P. F., & Koornneef, M. (2012). Signals of speciation within Arabidopsis thaliana in comparison with its relatives. Current Opinion in Plant Biology, 15(2), 205-211. Advance online publication. https://doi.org/10.1016/j.pbi.2012.01.002 [details]
- van Zanten, M., Tessadori, F., Peeters, A. J. M., & Fransz, P. (2012). Shedding light on large-scale chromatin reorganization in Arabidopsis thaliana. Molecular Plant, 5(3), 583-590. Advance online publication. https://doi.org/10.1093/mp/sss030 [details]
2011
- Fransz, P., & de Jong, H. (2011). From nucleosome to chromosome: a dynamic organization of genetic information. Plant Journal, 66(1), 4-17. https://doi.org/10.1111/j.1365-313X.2011.04526.x [details]
- Gaussand, GMDJ. -M., Jia, Q., van der Graaff, E., Lamers, G. E. M., Fransz, P. F., Hooykaas, P. J. J., & de Pater, S. (2011). Programmed cell death in the leaves of the Arabidopsis spontaneous necrotic spots (sns-D) mutant correlates with increased expression of the eukaryotic translation initiation factor eIF4B2. Frontiers in Plant Science, 2, 9. https://doi.org/10.3389/fpls.2011.00009 [details]
- van Zanten, M., Koini, M. A., Geyer, R., Liu, Y., Brambilla, V., Bartels, D., Koornneef, M., Fransz, P., & Soppe, W. J. J. (2011). Seed maturation in Arabidopsis thaliana is characterized by nuclear size reduction and increased chromatin condensation. Proceedings of the National Academy of Sciences of the United States of America, 108(50), 20219-20224. https://doi.org/10.1073/pnas.1117726108 [details]
2010
- Pavlova, P., Tessadori, F., de Jong, H. J., & Fransz, P. (2010). Immunocytological analysis of chromatin in isolated nuclei. In L. Hennig, & C. Köhler (Eds.), Plant developmental biology: methods and protocols (pp. 413-432). (Methods in molecular biology; No. 655). Humana Press. https://doi.org/10.1007/978-1-60761-765-5_28 [details]
- van Zanten, M., Tessadori, F., McLoughlin, F., Smith, R., Millenaar, F. F., van Driel, R., Voesenek, L. A. C. J., Peeters, A. J. M., & Fransz, P. (2010). Photoreceptors CRYTOCHROME2 and phytochrome B control chromatin compaction in Arabidopsis. Plant Physiology, 154(4), 1686-1696. https://doi.org/10.1104/pp.110.164616 [details]
2009
- Fransz, P. (2009). Chromatin domains and function. In I. Meier (Ed.), Functional organization of the plant nucleus (pp. 131-155). (Plant cell monographs; No. 14). Springer. https://doi.org/10.1007/978-3-540-71058-5_7 [details]
- Tessadori, F., van Zanten, M., Pavlova, P., Clifton, R., Pontvianne, F., Snoek, L. B., Millenaar, F. F., Schulkes, R. K., van Driel, R., Voesenek, L. A. C. J., Spillane, C., Pikaard, C. S., Fransz, P., & Peeters, A. J. M. (2009). PHYTOCHROME B and HISTONE DEACETYLASE 6 control light-induced chromatin compaction in Arabidopsis thaliana. PLOS Genetics, 5(9), e1000638. https://doi.org/10.1371/journal.pgen.1000638 [details]
2010
- van Zanten, M., Tessadori, F., Bossen, L., Peeters, A. J. M., & Fransz, P. (2010). Large-scale chromatin de-compaction induced by low light is not accompanied by nucleosomal displacement. Plant Signaling & Behavior, 5(12), 1677-1678. https://doi.org/10.4161/psb.5.12.14039 [details]
2021
2019
- Del Prete, S., Guichard, C., Brunaud, V., Gaudin, V., Molitor, A., Charif, D., Bessoltane, N., Soubigou-Taconnat, L., Granier, F. & Fransz, P. (2019). Additional file 10: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction. Figshare. https://doi.org/10.6084/m9.figshare.7980809
- Del Prete, S., Guichard, C., Brunaud, V., Gaudin, V., Molitor, A., Charif, D., Bessoltane, N., Soubigou-Taconnat, L., Granier, F. & Fransz, P. (2019). Additional file 9: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction. Figshare. https://doi.org/10.6084/m9.figshare.7980962.v1
- Del Prete, S., Guichard, C., Brunaud, V., Gaudin, V., Molitor, A., Charif, D., Bessoltane, N., Soubigou-Taconnat, L., Granier, F. & Fransz, P. (2019). Additional file 22: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction. Figshare. https://doi.org/10.6084/m9.figshare.7980914.v1
- Del Prete, S., Guichard, C., Brunaud, V., Gaudin, V., Molitor, A., Charif, D., Bessoltane, N., Soubigou-Taconnat, L., Granier, F. & Fransz, P. (2019). Additional file 17: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction. Figshare. https://doi.org/10.6084/m9.figshare.7980866.v1
- Del Prete, S., Guichard, C., Brunaud, V., Gaudin, V., Molitor, A., Charif, D., Bessoltane, N., Soubigou-Taconnat, L., Granier, F. & Fransz, P. (2019). Additional file 6: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction. Figshare. https://doi.org/10.6084/m9.figshare.7980947
- Del Prete, S., Guichard, C., Brunaud, V., Gaudin, V., Molitor, A., Charif, D., Bessoltane, N., Soubigou-Taconnat, L., Granier, F. & Fransz, P. (2019). Additional file 14: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction. Figshare. https://doi.org/10.6084/m9.figshare.7980845.v1
- Del Prete, S., Guichard, C., Brunaud, V., Gaudin, V., Molitor, A., Charif, D., Bessoltane, N., Soubigou-Taconnat, L., Granier, F. & Fransz, P. (2019). Additional file 21: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction. Figshare. https://doi.org/10.6084/m9.figshare.7980908
- Del Prete, S., Guichard, C., Brunaud, V., Gaudin, V., Molitor, A., Charif, D., Bessoltane, N., Soubigou-Taconnat, L., Granier, F. & Fransz, P. (2019). Additional file 7: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction. Figshare. https://doi.org/10.6084/m9.figshare.7980950.v1
- Del Prete, S., Guichard, C., Brunaud, V., Gaudin, V., Molitor, A., Charif, D., Bessoltane, N., Soubigou-Taconnat, L., Granier, F. & Fransz, P. (2019). Additional file 12: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction. Figshare. https://doi.org/10.6084/m9.figshare.7980830.v1
- Del Prete, S., Guichard, C., Brunaud, V., Gaudin, V., Molitor, A., Charif, D., Bessoltane, N., Soubigou-Taconnat, L., Granier, F. & Fransz, P. (2019). Additional file 13: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction. Figshare. https://doi.org/10.6084/m9.figshare.7980839
- Del Prete, S., Guichard, C., Brunaud, V., Gaudin, V., Molitor, A., Charif, D., Bessoltane, N., Soubigou-Taconnat, L., Granier, F. & Fransz, P. (2019). Additional file 5: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction. Figshare. https://doi.org/10.6084/m9.figshare.7980938
- Del Prete, S., Guichard, C., Brunaud, V., Gaudin, V., Molitor, A., Charif, D., Bessoltane, N., Soubigou-Taconnat, L., Granier, F. & Fransz, P. (2019). Additional file 19: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction. Figshare. https://doi.org/10.6084/m9.figshare.7980890.v1
- Del Prete, S., Guichard, C., Brunaud, V., Gaudin, V., Molitor, A., Charif, D., Bessoltane, N., Soubigou-Taconnat, L., Granier, F. & Fransz, P. (2019). Additional file 18: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction. Figshare. https://doi.org/10.6084/m9.figshare.7980878
- Del Prete, S., Guichard, C., Brunaud, V., Gaudin, V., Molitor, A., Charif, D., Bessoltane, N., Soubigou-Taconnat, L., Granier, F. & Fransz, P. (2019). Additional file 23: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction. Figshare. https://doi.org/10.6084/m9.figshare.7980920.v1
- Del Prete, S., Guichard, C., Brunaud, V., Gaudin, V., Molitor, A., Charif, D., Bessoltane, N., Soubigou-Taconnat, L., Granier, F. & Fransz, P. (2019). Additional file 15: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction. Figshare. https://doi.org/10.6084/m9.figshare.7980854.v1
This list of publications is extracted from the UvA-Current Research Information System. Questions? Ask the library or the Pure staff of your faculty / institute. Log in to Pure to edit your publications. Log in to Personal Page Publication Selection tool to manage the visibility of your publications on this list. -
Nevenwerkzaamheden
Geen nevenwerkzaamheden
Fuentes, R. R., Nieuwenhuis, R., Chouaref, J., Hesselink, T., van Dooijeweert, W., van den Broeck, H. C., Schijlen, E., Schouten, H. J., Bai, Y., Fransz, P., Stam, M., de Jong, H., Trivino, S. D., de Ridder, D., van Dijk, A. D. J., & Peters, S. A. (2024). A catalogue of recombination coldspots in interspecific tomato hybrids. PLOS Genetics, 20(7), Article e1011336.