Prada-Salcedo, L. D., Prada-Salcedo, J. P., Heintz-Buschart, A., Buscot, F., & Goldmann, K. (2022). Effects of Tree Composition and Soil Depth on Structure and Functionality of Belowground Microbial Communities in Temperate European Forests. Frontiers in Microbiology, 13, [920618]. https://doi.org/10.3389/fmicb.2022.920618
2021
Breitkreuz, C., Heintz-Buschart, A., Buscot, F., Wahdan, S. F. M., Tarkka, M., & Reitz, T. (2021). Can We Estimate Functionality of Soil Microbial Communities from Structure-Derived Predictions? A Reality Test in Agricultural Soils. Microbiology spectrum, e0027821. https://doi.org/10.1128/Spectrum.00278-21
Busi, S. B., de Nies, L., Habier, J., Wampach, L., Fritz, J. V., Heintz Buschart, A. U. S., May, P., Halder, R., de Beaufort, C., & Wilmes, P. (2021). Persistence of birth mode-dependent effects on gut microbiome composition, immune system stimulation and antimicrobial resistance during the first year of life. ISME Communications, 1, [8]. https://doi.org/10.1038/s43705-021-00003-5
Chakaroun, R. M., Massier, L., Heintz-Buschart, A., Said, N., Fallmann, J., Crane, A., Schütz, T., Dietrich, A., Blüher, M., Stumvoll, M., Musat, N., & Kovacs, P. (2021). Circulating bacterial signature is linked to metabolic disease and shifts with metabolic alleviation after bariatric surgery. Genome Medicine, 13, [105]. https://doi.org/10.1186/s13073-021-00919-6[details]
De Mesquita, C. P. B., Nichols, L. M., Gebert, M. J., Vanderburgh, C., Bocksberger, G., Lester, J. D., Kalan, A. K., Dieguez, P., McCarthy, M. S., Agbor, A., Varona, P. Á., Ayimisin, A. E., Bessone, M., Chancellor, R., Cohen, H., Coupland, C., Deschner, T., Egbe, V. E., Goedmakers, A., ... Heintz-Buschart, A. (2021). Structure of chimpanzee gut microbiomes across tropical Africa. mSystems, 6(3), [e01269-20]. https://doi.org/10.1128/mSystems.01269-20
Eisenhauer, N., Buscot, F., Heintz-Buschart, A., Jurburg, S. D., Küsel, K., Sikorski, J., Vogel, H. J., & Guerra, C. A. (2021). The multidimensionality of soil macroecology. Global Ecology and Biogeography, 30(1), 4-10. https://doi.org/10.1111/geb.13211
Ferlian, O., Goldmann, K., Eisenhauer, N., Tarkka, M. T., Buscot, F., & Heintz Buschart, A. U. S. (2021). Distinct effects of host and neighbour tree identity on arbuscular and ectomycorrhizal fungi along a tree diversity gradient. ISME Communications, 1, [40]. https://doi.org/10.1038/s43705-021-00042-y
Ganther, M., Vetterlein, D., Heintz-Buschart, A., & Tarkka, M. T. (2021). Transcriptome sequencing analysis of maize roots reveals the effects of substrate and root hair formation in a spatial context. Plant and Soil. https://doi.org/10.1007/s11104-021-04921-0
Gebauer, L., Bouffaud, M. L., Ganther, M., Yim, B., Vetterlein, D., Smalla, K., Buscot, F., Heintz-Buschart, A., & Tarkka, M. T. (2021). Soil Texture, Sampling Depth and Root Hairs Shape the Structure of ACC Deaminase Bacterial Community Composition in Maize Rhizosphere. Frontiers in Microbiology, 12, [616828]. https://doi.org/10.3389/fmicb.2021.616828
Marselle, M. R., Hartig, T., Cox, D. T. C., de Bell, S., Knapp, S., Lindley, S., Triguero-Mas, M., Böhning-Gaese, K., Braubach, M., Cook, P. A., de Vries, S., Heintz-Buschart, A., Hofmann, M., Irvine, K. N., Kabisch, N., Kolek, F., Kraemer, R., Markevych, I., Martens, D., ... Bonn, A. (2021). Pathways linking biodiversity to human health: A conceptual framework. Environment International, 150, [106420]. https://doi.org/10.1016/j.envint.2021.106420
Moll, J., Heintz-Buschart, A., Bässler, C., Hofrichter, M., Kellner, H., Buscot, F., & Hoppe, B. (2021). Amplicon Sequencing-Based Bipartite Network Analysis Confirms a High Degree of Specialization and Modularity for Fungi and Prokaryotes in Deadwood. mSphere, 6(1), 1-13. https://doi.org/10.1128/MSPHERE.00856-20
Prada-Salcedo, L. D., Goldmann, K., Heintz-Buschart, A., Reitz, T., Wambsganss, J., Bauhus, J., & Buscot, F. (2021). Fungal guilds and soil functionality respond to tree community traits rather than to tree diversity in European forests (vol 30, pg 572, 2021). Molecular Ecology, 30(8), 1936-1937. https://doi.org/10.1111/mec.15876
Prada-Salcedo, L. D., Goldmann, K., Heintz-Buschart, A., Reitz, T., Wambsganss, J., Bauhus, J., & Buscot, F. (2021). Fungal guilds and soil functionality respond to tree community traits rather than to tree diversity in European forests. Molecular Ecology, 30(2), 572-591. https://doi.org/10.1111/mec.15749
Purahong, W., Wahdan, S. F. M., Heinz, D., Jariyavidyanont, K., Sungkapreecha, C., Tanunchai, B., Sansupa, C., Sadubsarn, D., Alaneed, R., Heintz-Buschart, A., Schädler, M., Geissler, A., Kressler, J., & Buscot, F. (2021). Back to the Future: Decomposability of a Biobased and Biodegradable Plastic in Field Soil Environments and Its Microbiome under Ambient and Future Climates. Environmental Science and Technology. https://doi.org/10.1021/acs.est.1c02695
Smith, L. C., Orgiazzi, A., Eisenhauer, N., Cesarz, S., Lochner, A., Jones, A., Bastida, F., Patoine, G., Reitz, T., Buscot, F., Rillig, M. C., Heintz-Buschart, A., Lehmann, A., & Guerra, C. A. (2021). Large-scale drivers of relationships between soil microbial properties and organic carbon across Europe. Global Ecology and Biogeography, 30(10), 2070-2083. https://doi.org/10.1111/geb.13371
Wahdan, S. F. M., Heintz-Buschart, A., Sansupa, C., Tanunchai, B., Wu, Y. T., Schädler, M., Noll, M., Purahong, W., & Buscot, F. (2021). Targeting the Active Rhizosphere Microbiome of Trifolium pratense in Grassland Evidences a Stronger-Than-Expected Belowground Biodiversity-Ecosystem Functioning Link. Frontiers in Microbiology, 12, [629169]. https://doi.org/10.3389/fmicb.2021.629169
Wahdan, S. F. M., Reitz, T., Heintz-Buschart, A., Schädler, M., Roscher, C., Breitkreuz, C., Schnabel, B., Purahong, W., & Buscot, F. (2021). Organic agricultural practice enhances arbuscular mycorrhizal symbiosis in correspondence to soil warming and altered precipitation patterns. Environmental Microbiology, 6163-6176. https://doi.org/10.1111/1462-2920.15492[details]
de Nies, L., Lopes, S., Busi, S. B., Galata, V., Heintz-Buschart, A., Laczny, C. C., May, P., & Wilmes, P. (2021). PathoFact: a pipeline for the prediction of virulence factors and antimicrobial resistance genes in metagenomic data. Microbiome, 9(1), [49]. https://doi.org/10.1186/s40168-020-00993-9
2020
Cui, S., Li, M., Hassan, R. Y. A., Heintz-Buschart, A., Wang, J., & Bilitewski, U. (2020). Inhibition of Respiration of Candida albicans by Small Molecules Increases Phagocytosis Efficacy by Macrophages. mSphere, 5(2), [01620]. https://doi.org/10.1128/MSPHERE.00016-20
Fischer, F., Romero, R., Hellhund, A., Linne, U., Bertrams, W., Pinkenburg, O., Eldin, H. S., Binder, K., Jacob, R., Walker, A., Stecher, B., Basic, M., Luu, M., Mahdavi, R., Heintz-Buschart, A., Visekruna, A., & Steinhoff, U. (2020). Dietary cellulose induces anti-inflammatory immunity and transcriptional programs via maturation of the intestinal microbiota. Gut Microbes, 12(1), 1-17. https://doi.org/10.1080/19490976.2020.1829962
Ganther, M., Yim, B., Ibrahim, Z., Bienert, M. D., Lippold, E., MacCario, L., Sørensen, S. J., Bienert, G. P., Vetterlein, D., Heintz-Buschart, A., Blagodatskaya, E., Smalla, K., & Tarkka, M. T. (2020). Compatibility of X-ray computed tomography with plant gene expression, rhizosphere bacterial communities and enzyme activities. Journal of Experimental Botany, 71(18), 5603-5614. https://doi.org/10.1093/jxb/eraa262
Goldmann, K., Boeddinghaus, R. S., Klemmer, S., Regan, K. M., Heintz-Buschart, A., Fischer, M., Prati, D., Piepho, H. P., Berner, D., Marhan, S., Kandeler, E., Buscot, F., & Wubet, T. (2020). Unraveling spatiotemporal variability of arbuscular mycorrhizal fungi in a temperate grassland plot. Environmental Microbiology, 22(3), 873-888. https://doi.org/10.1111/1462-2920.14653
Guerra, C. A., Heintz-Buschart, A., Sikorski, J., Chatzinotas, A., Guerrero-Ramírez, N., Cesarz, S., Beaumelle, L., Rillig, M. C., Maestre, F. T., Delgado-Baquerizo, M., Buscot, F., Overmann, J., Patoine, G., Phillips, H. R. P., Winter, M., Wubet, T., Küsel, K., Bardgett, R. D., Cameron, E. K., ... Eisenhauer, N. (2020). Blind spots in global soil biodiversity and ecosystem function research. Nature Communications, 11(1), 3870. https://doi.org/10.1038/s41467-020-17688-2
Herold, M., Martínez Arbas, S., Narayanasamy, S., Sheik, A. R., Kleine-Borgmann, L. A. K., Lebrun, L. A., Kunath, B. J., Roume, H., Bessarab, I., Williams, R. B. H., Gillece, J. D., Schupp, J. M., Keim, P. S., Jäger, C., Hoopmann, M. R., Moritz, R. L., Ye, Y., Li, S., Tang, H., ... Wilmes, P. (2020). Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance. Nature Communications, 11(1), [5281]. https://doi.org/10.1038/s41467-020-19006-2
Jurburg, S. D., Konzack, M., Eisenhauer, N., & Heintz-Buschart, A. (2020). The archives are half-empty: an assessment of the availability of microbial community sequencing data. Communications biology, 3(1), [474]. https://doi.org/10.1038/s42003-020-01204-9
Schleuss, P. M., Widdig, M., Heintz-Buschart, A., Kirkman, K., & Spohn, M. (2020). Interactions of nitrogen and phosphorus cycling promote P acquisition and explain synergistic plant-growth responses. Ecology, 101(5), [e03003]. https://doi.org/10.1002/ecy.3003
Weißbecker, C., Schnabel, B., & Heintz-Buschart, A. (2020). Dadasnake, a snakemake implementation of DADA2 to process amplicon sequencing data for microbial ecology. GigaScience, 9(12), [giaa135]. https://doi.org/10.1093/gigascience/giaa135
Widdig, M., Heintz-Buschart, A., Schleuss, P. M., Guhr, A., Borer, E. T., Seabloom, E. W., & Spohn, M. (2020). Effects of nitrogen and phosphorus addition on microbial community composition and element cycling in a grassland soil. Soil Biology and Biochemistry, 151, [108041]. https://doi.org/10.1016/j.soilbio.2020.108041
2019
Hickl, O., Heintz-Buschart, A., Trautwein-Schult, A., Hercog, R., Bork, P., Wilmes, P., & Becher, D. (2019). Sample Preservation and Storage Significantly Impact Taxonomic and Functional Profiles in Metaproteomics Studies of the Human Gut Microbiome. Microorganisms, 7(9). https://doi.org/10.3390/microorganisms7090367
Peters, A., Krumbholz, P., Jäger, E., Heintz-Buschart, A., Çakir, M. V., Rothemund, S., Gaudl, A., Ceglarek, U., Schöneberg, T., & Stäubert, C. (2019). Metabolites of lactic acid bacteria present in fermented foods are highly potent agonists of human hydroxycarboxylic acid receptor 3. PLOS Genetics, 15(5), [e1008145]. https://doi.org/10.1371/journal.pgen.1008145
Schleuss, P. M., Widdig, M., Heintz-Buschart, A., Guhr, A., Martin, S., Kirkman, K., & Spohn, M. (2019). Stoichiometric controls of soil carbon and nitrogen cycling after long-term nitrogen and phosphorus addition in a mesic grassland in South Africa. Soil Biology and Biochemistry, 135, 294-303. https://doi.org/10.1016/j.soilbio.2019.05.018
Schmidt, T. S. B., Hayward, M. R., Coelho, L. P., Li, S. S., Costea, P. I., Voigt, A. Y., Wirbel, J., Maistrenko, O. M., Alves, R. J. C., Bergsten, E., de Beaufort, C., Sobhani, I., Heintz-Buschart, A., Sunagawa, S., Zeller, G., Wilmes, P., & Bork, P. (2019). Extensive transmission of microbes along the gastrointestinal tract. eLife, 8, [e42693]. https://doi.org/10.7554/eLife.42693
Weißbecker, C., Heintz-Buschart, A., Bruelheide, H., Buscot, F., & Wubet, T. (2019). Linking Soil Fungal Generality to Tree Richness in Young Subtropical Chinese Forests. Microorganisms, 7(11). https://doi.org/10.3390/microorganisms7110547
2018
Habier, J., May, P., Heintz-Buschart, A., Ghosal, A., Wienecke-Baldacchino, A. K., Nolte-‘t Hoen, E. N. M., Wilmes, P., & Fritz, J. V. (2018). Extraction and analysis of RNA isolated from pure bacteria-derived outer membrane vesicles. In Methods in Molecular Biology (pp. 213-230). (Methods in Molecular Biology; Vol. 1737). Humana Press Inc.. https://doi.org/10.1007/978-1-4939-7634-8_13
Heintz-Buschart, A., Pandey, U., Wicke, T., Sixel-Döring, F., Janzen, A., Sittig-Wiegand, E., Trenkwalder, C., Oertel, W. H., Mollenhauer, B., & Wilmes, P. (2018). The nasal and gut microbiome in Parkinson's disease and idiopathic rapid eye movement sleep behavior disorder. Movement Disorders, 33(1), 88-98. https://doi.org/10.1002/mds.27105
Heintz-Buschart, A., Yusuf, D., Kaysen, A., Etheridge, A., Fritz, J. V., May, P., de Beaufort, C., Upadhyaya, B. B., Ghosal, A., Galas, D. J., & Wilmes, P. (2018). Small RNA profiling of low biomass samples: Identification and removal of contaminants. BMC Biology, 16(1), [52]. https://doi.org/10.1186/s12915-018-0522-7
Laloo, A. E., Wei, J., Wang, D., Narayanasamy, S., Vanwonterghem, I., Waite, D., Steen, J., Kaysen, A., Heintz-Buschart, A., Wang, Q., Schulz, B., Nouwens, A., Wilmes, P., Hugenholtz, P., Yuan, Z., & Bond, P. L. (2018). Mechanisms of Persistence of the Ammonia-Oxidizing Bacteria Nitrosomonas to the Biocide Free Nitrous Acid. Environmental Science and Technology, 52(9), 5386-5397. https://doi.org/10.1021/acs.est.7b04273
Malabirade, A., Habier, J., Heintz-Buschart, A., May, P., Godet, J., Halder, R., Etheridge, A., Galas, D., Wilmes, P., & Fritz, J. V. (2018). The RNA complement of outer membrane vesicles from Salmonella enterica Serovar Typhimurium under distinct culture conditions. Frontiers in Microbiology, 9(AUG), [2015]. https://doi.org/10.3389/fmicb.2018.02015
Wampach, L., Heintz-Buschart, A., Fritz, J. V., Ramiro-Garcia, J., Habier, J., Herold, M., Narayanasamy, S., Kaysen, A., Hogan, A. H., Bindl, L., Bottu, J., Halder, R., Sjöqvist, C., May, P., Andersson, A. F., de Beaufort, C., & Wilmes, P. (2018). Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential. Nature Communications, 9(1), [5091]. https://doi.org/10.1038/s41467-018-07631-x
2017
Kaysen, A., Heintz-Buschart, A., Muller, E. E. L., Narayanasamy, S., Wampach, L., Laczny, C. C., Graf, N., Simon, A., Franke, K., Bittenbring, J., Wilmes, P., & Schneider, J. G. (2017). Integrated meta-omic analyses of the gastrointestinal tract microbiome in patients undergoing allogeneic hematopoietic stem cell transplantation. Translational Research, 186, 79-94.e1. https://doi.org/10.1016/j.trsl.2017.06.008
Wampach, L., Heintz-Buschart, A., Hogan, A., Muller, E. E. L., Narayanasamy, S., Laczny, C. C., Hugerth, L. W., Bindl, L., Bottu, J., Andersson, A. F., de Beaufort, C., & Wilmes, P. (2017). Colonization and succession within the human gut microbiome by archaea, bacteria, and microeukaryotes during the first year of life. Frontiers in Microbiology, 8(MAY), [738]. https://doi.org/10.3389/fmicb.2017.00738
2016
Cui, S., Hassan, R. Y. A., Heintz-Buschart, A., & Bilitewski, U. (2016). Regulation of Candida albicans interaction with macrophages through the activation of HOG pathway by genistein. Molecules, 21(2), [162]. https://doi.org/10.3390/molecules21020162
Fritz, J. V., Heintz-Buschart, A., Ghosal, A., Wampach, L., Etheridge, A., Galas, D., & Wilmes, P. (2016). Sources and Functions of Extracellular Small RNAs in Human Circulation. Annual Review of Nutrition, 36, 301-336. https://doi.org/10.1146/annurev-nutr-071715-050711
Heintz-Buschart, A., May, P., Laczny, C. C., Lebrun, L. A., Bellora, C., Krishna, A., Wampach, L., Schneider, J. G., Hogan, A., De Beaufort, C., & Wilmes, P. (2016). Integrated multi-omics of the human gut microbiome in a case study of familial type 1 diabetes. Nature Microbiology, 2(1), [16180]. https://doi.org/10.1038/nmicrobiol.2016.180
Laczny, C. C., Muller, E. E. L., Heintz-Buschart, A., Herold, M., Lebrun, L. A., Hogan, A., May, P., de Beaufort, C., & Wilmes, P. (2016). Identification, recovery, and refinement of hitherto undescribed population-level genomes from the human gastrointestinal tract. Frontiers in Microbiology, 7(JUN), [884]. https://doi.org/10.3389/fmicb.2016.00884
Narayanasamy, S., Jarosz, Y., Muller, E. E. L., Heintz-Buschart, A., Herold, M., Kaysen, A., Laczny, C. C., Pinel, N., May, P., & Wilmes, P. (2016). IMP: A pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses. Genome Biology, 17(1), [260]. https://doi.org/10.1186/s13059-016-1116-8
2015
Chen, X., Miché, L., Sachs, S., Wang, Q., Buschart, A., Yang, H., Vera Cruz, C. M., Hurek, T., & Reinhold-Hurek, B. (2015). Rice responds to endophytic colonization which is independent of the common symbiotic signaling pathway. New Phytologist, 208(2), 531-543. https://doi.org/10.1111/nph.13458
Ghosal, A., Upadhyaya, B. B., Fritz, J. V., Heintz-Buschart, A., Desai, M. S., Yusuf, D., Huang, D., Baumuratov, A., Wang, K., Galas, D., & Wilmes, P. (2015). The extracellular RNA complement of Escherichia coli. MicrobiologyOpen, 4(2), 252-266. https://doi.org/10.1002/mbo3.235
Mathay, C., Hamot, G., Henry, E., Georges, L., Bellora, C., Lebrun, L., De Witt, B., Ammerlaan, W., Buschart, A., Wilmes, P., & Betsou, F. (2015). Method optimization for fecal sample collection and fecal DNA extraction. Biopreservation and Biobanking, 13(2), 79-93. https://doi.org/10.1089/bio.2014.0031
Roume, H., Heintz-Buschart, A., Muller, E. E. L., May, P., Satagopam, V. P., Laczny, C. C., Narayanasamy, S., Lebrun, L. A., Hoopmann, M. R., Schupp, J. M., Gillece, J. D., Hicks, N. D., Engelthaler, D. M., Sauter, T., Keim, P. S., Moritz, R. L., & Wilmes, P. (2015). Comparative integrated omics: Identification of key functionalities in microbial community-wide metabolic networks. npj Biofilms and Microbiomes, 1, [15007]. https://doi.org/10.1038/npjbiofilms.2015.7
Wilmes, P., Heintz-Buschart, A., & Bond, P. L. (2015). A decade of metaproteomics: Where we stand and what the future holds. PROTEOMICS, 15(20), 3409-3417. https://doi.org/10.1002/pmic.201500183
2014
Muller, E. E. L., Pinel, N., Laczny, C. C., Hoopmann, M. R., Narayanasamy, S., Lebrun, L. A., Roume, H., Lin, J., May, P., Hicks, N. D., Heintz-Buschart, A., Wampach, L., Liu, C. M., Price, L. B., Gillece, J. D., Guignard, C., Schupp, J. M., Vlassis, N., Baliga, N. S., ... Wilmes, P. (2014). Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage. Nature Communications, 5, [5603]. https://doi.org/10.1038/ncomms6603
2013
Heintz-Buschart, A., Eickhoff, H., Hohn, E., & Bilitewski, U. (2013). Identification of inhibitors of yeast-to-hyphae transition in Candida albicans by a reporter screening assay. Journal of Biotechnology, 164(1), 137-142. https://doi.org/10.1016/j.jbiotec.2012.12.004
Roume, H., Heintz-Buschart, A., Muller, E. E. L., & Wilmes, P. (2013). Sequential isolation of metabolites, RNA, DNA, and proteins from the same unique sample. In Microbial Metagenomics, Metatranscriptomics, and Metaproteomics (pp. 219-236). (Methods in Enzymology; Vol. 531). Academic Press Inc.. https://doi.org/10.1016/B978-0-12-407863-5.00011-3
2012
Buschart, A., Burakowska, A., & Bilitewski, U. (2012). The fungicide fludioxonil antagonizes fluconazole activity in the human fungal pathogen Candida albicans. Journal of Medical Microbiology, 61(PART12), 1696-1703. https://doi.org/10.1099/jmm.0.050963-0
Buschart, A., Gremmer, K., El-Mowafy, M., van den Heuvel, J., Mueller, P. P., & Bilitewski, U. (2012). A novel functional assay for fungal histidine kinases group III reveals the role of HAMP domains for fungicide sensitivity. Journal of Biotechnology, 157(1), 268-277. https://doi.org/10.1016/j.jbiotec.2011.09.017
Buschart, A., Sachs, S., Chen, X., Herglotz, J., Krause, A., & Reinhold-Hurek, B. (2012). Flagella mediate endophytic competence rather than act as MAMPs in rice-Azoarcus sp. strain BH72 interactions. Molecular Plant-Microbe Interactions, 25(2), 191-199. https://doi.org/10.1094/MPMI-05-11-0138
Heintz-Buschart, A., & Westerhuis, J. A. (2022). A beginner’s guide to integrating multi-omics data from microbial communities. Biochemist, 44(3), 23-29. https://doi.org/10.1042/bio_2022_100[details]
Phillips, H. R. P., Heintz-Buschart, A., & Eisenhauer, N. (2020). Putting soil invertebrate diversity on the map. Molecular Ecology, 29(4), 655-657. https://doi.org/10.1111/mec.15371
2019
Peters, A., Krumbholz, P., Jäger, E., Heintz-Buschart, A., Çakir, M. V., Rothemund, S., Gaudl, A., Ceglarek, U., Schöneberg, T., & Stäubert, C. (2019). Correction: Metabolites of lactic acid bacteria present in fermented foods are highly potent agonists of human hydroxycarboxylic acid receptor 3 (PLOS Genetics, (2019), 15, 5, 10.1371/journal.pgen.1008145). PLOS Genetics, 15(7), [e1008283]. https://doi.org/10.1371/journal.pgen.1008283
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