Pagliarello, R., Bennici, E., Cemmi, A., Di Sarcina, I., Spelt, C., Nardi, L., Del Fiore, A., De Rossi, P., Paolini, F., Koes, R., Quattrocchio, F., Benvenuto, E., & Massa, S. (2023). Designing a novel tomato ideotype for future cultivation in space manned missions. Frontiers in Astronomy and Space Sciences, 9, Article 1040633. https://doi.org/10.3389/fspas.2022.1040633[details]
Strazzer, P., Verbree, B., Bliek, M., Koes, R., & Quattrocchio, F. M. (2023). The Amsterdam petunia germplasm collection: A tool in plant science. Frontiers in Plant Science, 14, Article 1129724. https://doi.org/10.3389/fpls.2023.1129724[details]
Massa, S., Pagliarello, R., Cemmi, A., Di Sarcina, I., Bombarely, A., Demurtas, O. C., Diretto, G., Paolini, F., Petzold, H. E., Bliek, M., Bennici, E., Del Fiore, A., De Rossi, P., Spelt, C., Koes, R., Quattrocchio, F., & Benvenuto, E. (2022). Modifying Anthocyanins Biosynthesis in Tomato Hairy Roots: A Test Bed for Plant Resistance to Ionizing Radiation and Antioxidant Properties in Space. Frontiers in Plant Science, 13, Article 830931. https://doi.org/10.3389/fpls.2022.830931[details]
Li, S., Cerri, M., Strazzer, P., Li, Y., Spelt, C., Bliek, M., Vandenbussche, M., Martínez-Calvó, E., Lai, B., Reale, L., Koes, R., & Quattrocchio, F. M. (2021). An ancient RAB5 governs the formation of additional vacuoles and cell shape in petunia petals. Cell Reports, 36(13), Article 109749. https://doi.org/10.1016/j.celrep.2021.109749, https://doi.org/10.1016/j.celrep.2021.109749[details]
Amato, A., Cavallini, E., Walker, A. R., Pezzotti, M., Bliek, M., Quattrocchio, F., Koes, R., Ruperti, B., Bertini, E., Zenoni, S., & Tornielli, G. B. (2019). The MYB5-driven MBW complex recruits a WRKY factor to enhance the expression of targets involved in vacuolar hyper-acidification and trafficking in grapevine. Plant Journal, 99(6), 1220-1241. https://doi.org/10.1111/tpj.14419[details]
Paauw, M., Koes, R., & Quattrocchio, F. M. (2019). Alteration of flavonoid pigmentation patterns during domestication of food crops. Journal of Experimental Botany, 70(15), 3719-3735. Advance online publication. https://doi.org/10.1093/jxb/erz141[details]
Strazzer, P., Spelt, C. E., Li, S., Bliek, M., Federici, C. T., Roose, M. L., Koes, R., & Quattrocchio, F. M. (2019). Hyperacidification of Citrus fruits by a vacuolar proton-pumping P-ATPase complex. Nature Communications, 10, Article 744. https://doi.org/10.1038/s41467-019-08516-3[details]
Leijten, W., Koes, R., Roobeek, I., & Frugis, G. (2018). Translating Flowering Time From Arabidopsis thaliana to Brassicaceae and Asteraceae Crop Species. Plants (Basel, Switzerland), 7(4), Article 111. https://doi.org/10.3390/plants7040111[details]
Faraco, M., Li, Y., Li, S., Spelt, C., Di Sansebastiano, G. P., Reale, L., Ferranti, F., Verweij, W., Koes, R., & Quattrocchio, F. M. (2017). A Tonoplast P3B-ATPase Mediates Fusion of Two Types of Vacuoles in Petal Cells. Cell Reports, 19(12), 2413-2422. https://doi.org/10.1016/j.celrep.2017.05.076[details]
Li, Y., Iqbal, M., Zhang, Q., Spelt, C., Bliek, M., Hakvoort, H. W. J., Quattrocchio, F. M., Koes, R., & Schat, H. (2017). Two Silene vulgaris copper transporters residing in different cellular compartments confer copper hypertolerance by distinct mechanisms when expressed in Arabidopsis thaliana. New Phytologist, 215(3), 1102-1114. https://doi.org/10.1111/nph.14647[details]
2016
Bombarely, A., Moser, M., Amrad, A., Bao, M., Bapaume, L., Barry, C. S., Bliek, M., Boersma, M. R., Borghi, L., Bruggmann, R., Bucher, M., D'Agostino, N., Davies, K., Druege, U., Dudareva, N., Egea-Cortines, M., Delledonne, M., Fernandez-Pozo, N., Franken, P., ... Kuhlemeier, C. (2016). Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida. Nature Plants, 2, Article 16074. https://doi.org/10.1038/nplants.2016.74[details]
Li, Y., Provenzano, S., Bliek, M., Spelt, C., Appelhagen, I., Machado de Faria, L., Verweij, W., Schubert, A., Sagasser, M., Seidel, T., Weisshaar, B., Koes, R., & Quattrocchio, F. (2016). Evolution of tonoplast P-ATPase transporters involved in vacuolar acidification. New Phytologist, 211(3), 1092-1107. Advance online publication. https://doi.org/10.1111/nph.14008[details]
Passeri, V., Koes, R., & Quattrocchio, F. M. (2016). New Challenges for the Design of High Value Plant Products: Stabilization of Anthocyanins in Plant Vacuoles. Frontiers in Plant Science, 7, Article 153. https://doi.org/10.3389/fpls.2016.00153[details]
Prinsi, B., Negri, A. S., Quattrocchio, F., Koes, R. E., & Espen, L. (2016). Proteomics of red and white corolla limbs in petunia reveals a novel function of the anthocyanin regulator ANTHOCYANIN1 in determining flower longevity. Journal of Proteomics, 131, 38-47. https://doi.org/10.1016/j.jprot.2015.10.008[details]
Verweij, W., Spelt, C. E., Bliek, M., de Vries, M., Wit, N., Faraco, M., Koes, R., & Quattrocchio, F. (2016). Functionally Similar WRKY Proteins Regulate Vacuolar Acidification in Petunia and Hair Development in Arabidopsis. The Plant Cell, 28(3), 786-803. Advance online publication. https://doi.org/10.1105/tpc.15.00608[details]
2015
Appelhagen, I., Nordholt, N., Seidel, T., Spelt, K., Koes, R., Quattrochio, F., Sagasser, M., & Weisshaar, B. (2015). TRANSPARENT TESTA 13 is a tonoplast P3A -ATPase required for vacuolar deposition of proanthocyanidins in Arabidopsis thaliana seeds. Plant Journal, 82(5), 840-849. https://doi.org/10.1111/tpj.12854[details]
Kusters, E., Della Pina, S., Castel, R., Souer, E., & Koes, R. (2015). Changes in cis-regulatory elements of a key floral regulator are associated with divergence of inflorescence architectures. Development - The Company of Biologists, 142(16), 2822-2831. https://doi.org/10.1242/dev.121905[details]
Della Pina, S., Souer, E., & Koes, R. (2014). Arguments in the evo-devo debate: Say it with flowers! Journal of Experimental Botany, 65(9), 2231-2242. https://doi.org/10.1093/jxb/eru111
Faraco, M., Spelt, C., Bliek, M., Verweij, W., Hoshino, A., Espen, L., Prinsi, B., Jaarsma, R., Tarhan, E., deBoer, A. H., DiSansebastiano, G. P., Koes, R., & Quattrocchio, F. M. (2014). Hyperacidification of vacuoles by the combined action of two different P-ATPases in the tonoplast determines flower color. Cell Reports, 6(1), 32-43. https://doi.org/10.1016/j.celrep.2013.12.009
Provenzano, S., Spelt, C., Hosokawa, S., Nakamura, N., Brugliera, F., Demelis, L., Geerke, D. P., Schubert, A., Tanaka, Y., Quattrocchio, F., & Koes, R. (2014). Genetic Control and Evolution of Anthocyanin Methylation. Plant Physiology, 165(3), 962-977. https://doi.org/10.1104/pp.113.234526
2013
Quattrocchio, F. M., Spelt, C., & Koes, R. (2013). Transgenes and protein localization: Myths and legends. Trends in Plant Science, 18(9), 473-476. https://doi.org/10.1016/j.tplants.2013.07.003
Verhoef, N., Yokota, T., Shibata, K., De Boer, G. J., Gerats, T., Vandenbussche, M., Koes, R., & Souer, E. (2013). Brassinosteroid biosynthesis and signalling in Petunia hybrida. Journal of Experimental Botany, 64(8), 2435-2448. https://doi.org/10.1093/jxb/ert102
2011
Faraco, M., di Sansebastiano, G. P., Spelt, K., Koes, R. E., & Quattrocchio, F. M. (2011). One protoplast is not the other! Plant Physiology, 156(2), 474-478. https://doi.org/10.1104/pp.111.173708
Zenoni, S., D'Agostino, N., Tornielli, G. B., Quattrocchio, F., Chiusano, M. L., Koes, R., Zethof, J., Guzzo, F., Delledonne, M., Frusciante, L., Gerats, T., & Pezzotti, M. (2011). Revealing impaired pathways in the an11 mutant by high-throughput characterization of Petunia axillaris and Petunia inflata transcriptomes. Plant Journal, 68(1), 11-27. https://doi.org/10.1111/j.1365-313X.2011.04661.x
2010
Castel, R., Kusters, E., & Koes, R. (2010). Inflorescence development in petunia: Through the maze of botanical terminology. Journal of Experimental Botany, 61(9), 2235-2246. https://doi.org/10.1093/jxb/erq061
Rijpkema, A. S., Vandenbussche, M., Koes, R., Heijmans, K., & Gerats, T. (2010). Variations on a theme: Changes in the floral ABCs in angiosperms. Seminars in Cell and Developmental Biology, 21(1), 100-107. https://doi.org/10.1016/j.semcdb.2009.11.002
2009
Koes, R., Bliek, M., Castel, R., Kusters, E., Procissi, A., Rebocho, A., & Roobeek, I. (2009). Development of the Petunia inflorescence. In Petunia: Evolutionary, Developmental and Physiological Genetics (Second Edition) (pp. 179-197). Springer New York. https://doi.org/10.1007/978-0-387-84796-2_9
Tornielli, G., Koes, R., & Quattrocchio, F. (2009). The genetics of flower color. In Petunia: Evolutionary, Developmental and Physiological Genetics (Second Edition) (pp. 269-299). Springer. https://doi.org/10.1007/978-0-387-84796-2_13
Vandenbussche, M., Horstman, A., Zethof, J., Koes, R., Rijpkema, A. S., & Gerats, T. (2009). Differential recruitment of WOX transcription factors for lateral development and organ fusion in Petunia and Arabidopsis. Plant Cell, 21(8), 2269-2283. https://doi.org/10.1105/tpc.109.065862
Rebocho, A. B., Bliek, M., Kusters, E., Castel, R., Procissi, A., Roobeek, I., Souer, E., & Koes, R. (2008). Role of EVERGREEN in the Development of the Cymose Petunia Inflorescence. Developmental Cell, 15(3), 437-447. https://doi.org/10.1016/j.devcel.2008.08.007
Souer, E., Rebocho, A. B., Bliek, M., Kusters, E., De Bruin, R. A. M., & Koes, R. (2008). Patterning of inflorescences and flowers by the F-box protein Double Top and the Leafy homolog Aberrant Leaf and Flower of Petunia. Plant Cell, 20(8), 2033-2048. https://doi.org/10.1105/tpc.108.060871
Verweij, W., Spelt, C., Di Sansebastiano, G-P., Vermeer, J., Reale, L., Ferranti, F., Koes, R., & Quattrocchio, F. (2008). An H+ P-ATPase on the tonoplast determines vacuolar pH and flower colour. Nature Cell Biology, 10(12), 1456-1462. https://doi.org/10.1038/ncb1805[details]
2007
Baumann, K., Perez-Rodriguez, M., Bradley, D., Venail, J., Bailey, P., Jin, H., Koes, R., Roberts, K., & Martin, C. (2007). Control of cell and petal morphogenesis by R2R3 MYB transcription factors. Development, 134(9), 1691-1701. https://doi.org/10.1242/dev.02836
2006
Quattrocchio, F., Verweij, W., Kroon, A., Spelt, C., Mol, J., & Koes, R. (2006). PH4 of petunia is an R2R3 MYB protein that activates vacuolar acidification through interactions with basic-helix-loop-helix transcription factors of the anthocyanin pathway. Plant Cell, 18(5), 1274-1291. https://doi.org/10.1105/tpc.105.034041
2005
Angenent, G. C., Stuurman, J., Snowden, K. C., & Koes, R. (2005). Use of Petunia to unravel plant meristem functioning. Trends in Plant Science, 10(5), 243-250. https://doi.org/10.1016/j.tplants.2005.03.004
Koes, R., Verweij, W., & Quattrocchio, F. (2005). Flavonoids: A colorful model for the regulation and evolution of biochemical pathways. Trends in Plant Science, 10(5), 236-242. https://doi.org/10.1016/j.tplants.2005.03.002
2003
Vandenbussche, M., Zethof, J., Souer, E., Koes, R., Tornielli, G. B., Pezzotti, M., Ferrario, S., Angenent, G. C., & Gerats, T. (2003). Toward the Analysis of the Petunia MADS Box Gene Family by Reverse and Forward Transposon Insertion Mutagenesis Approaches: B, C, and D Floral Organ Identity Functions Require Sepallata-Like MADS Box Genes in Petunia. Plant Cell, 15(11), 2680-2693. https://doi.org/10.1105/tpc.017376
2002
Spelt, C., Quattrocchio, F., Mol, J., & Koes, R. (2002). ANTHOCYANIN1 of petunia controls pigment synthesis, vacuolar pH, and seed coat development by genetically distinct mechanisms. Plant Cell, 14(9), 2121-2135. https://doi.org/10.1105/tpc.003772
Tobeña-Santamaria, R., Bliek, M., Ljung, K., Sandberg, G., Mol, J. N. M., Souer, E., & Koes, R. (2002). FLOOZY of petunia is a flavin mono-oxygenase-like protein required for the specification of leaf and flower architecture. Genes & Development, 16(6), 753-763. https://doi.org/10.1101/gad.219502[details]
2000
Spelt, C., Quattrocchio, F., Mol, J. N. M., & Koes, R. (2000). Anthocyanin1 of Petunia encodes a basic helix-loop-helix protein that directly activates transcription of structural anthocyanin genes. Plant Cell, 12(9), 1619-1631. https://doi.org/10.1105/tpc.12.9.1619
Verwoert, I., Meller-Harel, Y., Van der Linden, K., Verbree, B., Koes, R., & Stuitje, A. (2000). The molecular basis of the high linoleic acid content in Petunia seed oil: Analysis of a seed-specific linoleic acid mutant. Biochemical Society Transactions, 28(6), 631-632. https://doi.org/10.1042/bst0280631
1999
De Vetten, N., Ter Horst, J., Van Schaik, H. P., De Boer, A., Mol, J., & Koes, R. (1999). A cytochrome b5 is required for full activity of flavonoid 3′,5′-hydroxylase, a cytochrome P450 involved in the formation of blue flower colors. Proceedings of the National Academy of Sciences of the United States of America, 96(2), 778-783. https://doi.org/10.1073/pnas.96.2.778
Quattrocchio, F., Wing, J., Van Der Woude, K., Souer, E., De Vetten, N., Joseph, M., & Koes, R. (1999). Molecular analysis of the anthocyanin2 gene of Petunia and its role in the evolution of flower color. Plant Cell, 11(8), 1433-1444. https://doi.org/10.1105/tpc.11.8.1433
Van Houwelingen, A., Souer, E., Mol, J., & Koes, R. (1999). Epigenetic interactions among three dTph1 transposons in two homologous chromosomes activate a new excision-repair mechanism in Petunia. Plant Cell, 11(7), 1319-1336. https://doi.org/10.1105/tpc.11.7.1319
de Bruin, R., Spelt, K., Mol, J., Koes, R., & Quattrocchio, F. (1999). Selection of high-affinity phage antibodies from phage display libraries. Nature Biotechnology, 17(4), 397-399. https://doi.org/10.1038/7959
1998
Alfenito, M. R., Souer, E., Goodman, C. D., Buell, R., Mol, J., Koes, R., & Walbot, V. (1998). Functional complementation of anthocyanin sequestration in the vacuole by widely divergent glutathione S-transferases. Plant Cell, 10(7), 1135-1149. https://doi.org/10.1105/tpc.10.7.1135
Quattrocchio, F., Wing, J. F., Van der Woude, K., Mol, J. N. M., & Koes, R. (1998). Analysis of bHLH and MYB domain proteins: Species-specific regulatory differences are caused by divergent evolution of target anthocyanin genes. Plant Journal, 13(4), 475-488. https://doi.org/10.1046/j.1365-313X.1998.00046.x
Souer, E., Van Der Krol, A., Kloos, D., Spelt, C., Bliek, M., Mol, J., & Koes, R. (1998). Genetic control of branching pattern and floral identity during Petunia inflorescence development. Development, 125(4), 733-742.
Van Houwelingen, A., Souer, E., Spelt, K., Kloos, D., Mol, J., & Koes, R. (1998). Analysis of flower pigmentation mutants generated by random transposon mutagenesis in Petunia hybrida. Plant Journal, 13(1), 39-50. https://doi.org/10.1046/j.1365-313X.1998.00005.x
1997
De Vetten, N., Quattrocchio, F., Mol, J., & Koes, R. (1997). The an11 locus controlling flower pigmentation in petunia encodes a novel WD-repeat protein conserved in yeast, plants, and animals. Genes and Development, 11(11), 1422-1434. https://doi.org/10.1101/gad.11.11.1422
1996
Souer, E., Van Houwelingen, A., Kloos, D., Mol, J., & Koes, R. (1996). The no apical Meristem gene of petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries. Cell, 85(2), 159-170. https://doi.org/10.1016/S0092-8674(00)81093-4
1995
Huits, H. S. M., Wijsman, H. J. W., Koes, R. E., & Gerats, A. G. M. (1995). Genetic characterisation of Act1, the activator of a non-autonomous transposable element from Petunia hybrida. Theoretical and Applied Genetics, 91(1), 110-117. https://doi.org/10.1007/BF00220866
Koes, R., Souer, E., Van Houwelingen, A., Mur, L., Spelt, C., Quattrocchio, F., Wing, J., Oppedijk, B., Ahmed, S., & Maes, T. (1995). Targeted gene inactivation in petunia by PCR-based selection of transposon insertion mutants. Proceedings of the National Academy of Sciences of the United States of America, 92(18), 8149-8153. https://doi.org/10.1073/pnas.92.18.8149
N.M. Mol, J., Holton, T. A., & Koes, R. E. (1995). Floriculture: genetic engineering of commercial traits. Trends in Biotechnology, 13(9), 350-355. https://doi.org/10.1016/S0167-7799(00)88980-5
Souer, E., Quattrocchio, F., De Vetten, N., Mol, J., & Koes, R. (1995). A general method to isolate genes tagged by a high copy number transposable element. The Plant Journal, 7(4), 677-685. https://doi.org/10.1046/j.1365-313X.1995.7040677.x
1994
Huits, H. S. M., Gerats, A. G. M., Kreike, M. M., Mol, J. N. M., & Koes, R. E. (1994). Genetic control of dihydroflavonol 4‐reductase gene expression in Petunia hybrida. The Plant Journal, 6(3), 295-310. https://doi.org/10.1046/j.1365-313X.1994.06030295.x
Koes, R. E., Quattrocchio, F., & Mol, J. N. M. (1994). The flavonoid biosynthetic pathway in plants: Function and evolution. BioEssays, 16(2), 123-132. https://doi.org/10.1002/bies.950160209
Kroon, J., Souer, E., De Graaff, A., Xue, Y., Mol, J., & Koes, R. (1994). Cloning and structural analysis of the anthocyanin pigmentation locus Rt of Petunia hybrida: characterization of insertion sequences in two mutant alleles. The Plant Journal, 5(1), 69-80. https://doi.org/10.1046/j.1365-313X.1994.5010069.x
1993
Quattrocchio, F., Wing, J. F., Leppen, H. T. C., Mol, J. N. M., & Koes, R. E. (1993). Regulatory genes controlling anthocyanin pigmentation are functionally conserved among plant species and have distinct sets of target genes. Plant Cell, 5(11), 1497-1512.
1990
Koes, R. E., Van Blokland, R., Quattrocchio, F., Van Tunen, A. J., & Mol, J. N. M. (1990). Chalcone synthase promoters in petunia are active in pigmented and unpigmented cell types. Plant Cell, 2(5), 379-392. https://doi.org/10.2307/3869088
Quattrocchio, F., Tolk, M. A., Coraggio, I., Mol, J. N. M., Viotti, A., & Koes, R. E. (1990). The maize zein gene zE19 contains two distinct promoters which are independently activated in endosperm and anthers of transgenic Petunia plants. Plant Molecular Biology, 15(1), 81-93. https://doi.org/10.1007/BF00017726
Van Tunen, A. J., Mur, L. A., Brouns, G. S., Rienstra, J. D., Koes, R. E., & Mol, J. N. M. (1990). Pollen- and anther-specific chi promoters from petunia: Tandem promoter regulation of the chiA gene. Plant Cell, 2(5), 393-401. https://doi.org/10.1105/tpc.2.5.393
1989
Koes, R. E., Spelt, C. E., & Mol, J. N. M. (1989). The chalcone synthase multigene family of Petunia hybrida (V30): differential, light-regulated expression during flower development and UV light induction. Plant Molecular Biology, 12(2), 213-225. https://doi.org/10.1007/BF00020506
Koes, R. E., Spelt, C. E., van den Elzen, P. J. M., & Mol, J. N. M. (1989). Cloning and molecular characterization of the chalcone synthase multigene family of Petunia hybrida. Gene, 81(2), 245-257. https://doi.org/10.1016/0378-1119(89)90185-6
1988
Mol, J. N. M., Stuitje, T. R., Gerats, A. G. M., & Koes, R. E. (1988). Cloned genes of phenylpropanoid metabolism in plants. Plant Molecular Biology Reporter, 6(4), 274-278. https://doi.org/10.1007/BF02670388
Van Der Krol, A. R., Lenting, P. E., Veenstra, J., Van Der Meer, I. M., Koes, R. E., Gerats, A. G. M., Mol, J. N. M., & Stuitje, A. R. (1988). An anti-sense chalcone synthase gene in transgenic plants inhibits flower pigmentation. Nature, 333(6176), 866-869. https://doi.org/10.1038/333866a0
van Tunen, A. J., Koes, R. E., Spelt, C. E., van der Krol, A. R., Stuitje, A. R., & Mol, J. N. (1988). Cloning of the two chalcone flavanone isomerase genes from Petunia hybrida: coordinate, light-regulated and differential expression of flavonoid genes. The EMBO journal, 7(5), 1257-1263. https://doi.org/10.1002/j.1460-2075.1988.tb02939.x
1987
Koes, R. E., Spelt, C. E., Mol, J. N. M., & Gerats, A. G. M. (1987). The chalcone synthase multigene family of Petunia hybrida (V30): sequence homology, chromosomal localization and evolutionary aspects. Plant Molecular Biology, 10(2), 159-169. https://doi.org/10.1007/BF00016153
1986
Koes, R. E., Spelt, C. E., Reif, H. J., van Den Elzen, P. J. M., Veltkamp, E., & Mol, J. N. M. (1986). Floral tissue of Petunia hybrida (V30) expresses only one member of the chalcone synthase multigene family. Nucleic Acids Research, 14(13), 5229-5239. https://doi.org/10.1093/nar/14.13.5229
1984
Bovenberg, W. A., Koes, R. E., Kool, A. J., & Nijkamp, H. J. J. (1984). Physical mapping, nucleotide sequencing and expression in E. coli minicells of the gene for the large subunit of ribulose bisphosphate carboxylase from Petunia hybrida. Current Genetics, 8(3), 231-241. https://doi.org/10.1007/BF00417821
Spreker
Koes, R. E. (invited speaker) (10-9-2016). The mechanism of color fading in plants: the petunia mode, 15th World Petunia Days, Wittenberg.
Weber, B. B. M. (2018). Identification and validation of maize enhancers: A cartography of the maize regulatory genome. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
del Prete, S. (2017). Characterisation of transcriptional and chromatin events in relation to floral transition and identification of nuclear organisation determinants. [Thesis, fully internal, Universiteit van Amsterdam, Université Paris Saclay]. [details]
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