Koopman, N., Jaspers, Y., van Leeuwen, P. T., Chronas, K., Li Yim, A. Y. F., Diederen, K., te Velde, A. A., Roseboom, W., Kindermann, A., Benninga, M. A., Kramer, G., de Jonge, W. J., Brul, S., Levin, E., Kemp, S., & Seppen, J. (2025). Integrated multi-omics of feces, plasma and urine can describe and differentiate pediatric active Crohn's Disease from remission. Communications medicine, 5, 281. https://doi.org/10.1038/s43856-025-00984-7
2021
Metselaar, P. I., Mendoza-Maldonado, L., Li Yim, A. Y. F., Abarkan, I., Henneman, P., te Velde, A. A., Schönhuth, A., Bosch, J. A., Kraneveld, A. D., & Lopez-Rincon, A. (2021). Recursive ensemble feature selection provides a robust mRNA expression signature for myalgic encephalomyelitis/chronic fatigue syndrome. Scientific Reports, 11, Article 4541. https://doi.org/10.1038/s41598-021-83660-9[details]
Joustra, V. W. (2023). Pharmaco-epigenetic biomarkers and optimization of post-operative management in inflammatory bowel disease. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
Chapter 4: Peripheral blood DNA methylation biomarkers accurately predict response to vedolizumab and ustekinumab in Crohn’s disease: The EPIC-CD study(embargo until 20 December 2025)
Li Yim, A. Y. F. (2022). Towards the identification of Crohn’s disease-associated epigenetic biomarkers in leukocytes: A potential role in personalized diagnostics and treatment. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
Ghiboub, M., Koster, J., Craggs, P. D., Li Yim, A., Shillings, A., Hutchinson, S., Bingham, R. P., Gatfield, K., Hageman, I. L., Yao, G., O’Keefe, H. P., Coffin, A., Patel, A., Sloan, L. A., Mitchell, D. J., Hayhow, T. G., Lunven, L., Watson, R. J., Blunt, C. E., … Harker, N. R. (2022). Additional file 10 of Modulation of macrophage inflammatory function through selective inhibition of the epigenetic reader protein SP140. Figshare. https://doi.org/10.6084/m9.figshare.20521093.v1
Ghiboub, M., Koster, J., Craggs, P. D., Li Yim, A., Shillings, A., Hutchinson, S., Bingham, R. P., Gatfield, K., Hageman, I. L., Yao, G., O’Keefe, H. P., Coffin, A., Patel, A., Sloan, L. A., Mitchell, D. J., Hayhow, T. G., Lunven, L., Watson, R. J., Blunt, C. E., … Harker, N. R. (2022). Additional file 14 of Modulation of macrophage inflammatory function through selective inhibition of the epigenetic reader protein SP140. Figshare. https://doi.org/10.6084/m9.figshare.20521111.v1
Ghiboub, M., Koster, J., Craggs, P. D., Li Yim, A., Shillings, A., Hutchinson, S., Bingham, R. P., Gatfield, K., Hageman, I. L., Yao, G., O’Keefe, H. P., Coffin, A., Patel, A., Sloan, L. A., Mitchell, D. J., Hayhow, T. G., Lunven, L., Watson, R. J., Blunt, C. E., … Harker, N. R. (2022). Additional file 13 of Modulation of macrophage inflammatory function through selective inhibition of the epigenetic reader protein SP140. Figshare. https://doi.org/10.6084/m9.figshare.20521105.v1
Ghiboub, M., Koster, J., Craggs, P. D., Li Yim, A., Shillings, A., Hutchinson, S., Bingham, R. P., Gatfield, K., Hageman, I. L., Yao, G., O’Keefe, H. P., Coffin, A., Patel, A., Sloan, L. A., Mitchell, D. J., Hayhow, T. G., Lunven, L., Watson, R. J., Blunt, C. E., … Harker, N. R. (2022). Additional file 12 of Modulation of macrophage inflammatory function through selective inhibition of the epigenetic reader protein SP140. Figshare. https://doi.org/10.6084/m9.figshare.20521102.v1
Ghiboub, M., Koster, J., Craggs, P. D., Li Yim, A., Shillings, A., Hutchinson, S., Bingham, R. P., Gatfield, K., Hageman, I. L., Yao, G., O’Keefe, H. P., Coffin, A., Patel, A., Sloan, L. A., Mitchell, D. J., Hayhow, T. G., Lunven, L., Watson, R. J., Blunt, C. E., … Harker, N. R. (2022). Additional file 15 of Modulation of macrophage inflammatory function through selective inhibition of the epigenetic reader protein SP140. Figshare. https://doi.org/10.6084/m9.figshare.20521114.v1
Ghiboub, M., Koster, J., Craggs, P. D., Li Yim, A., Shillings, A., Hutchinson, S., Bingham, R. P., Gatfield, K., Hageman, I. L., Yao, G., O’Keefe, H. P., Coffin, A., Patel, A., Sloan, L. A., Mitchell, D. J., Hayhow, T. G., Lunven, L., Watson, R. J., Blunt, C. E., … Harker, N. R. (2022). Additional file 11 of Modulation of macrophage inflammatory function through selective inhibition of the epigenetic reader protein SP140. Figshare. https://doi.org/10.6084/m9.figshare.20521099.v1
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