Dr. J.W. (Jake) O'Brien PhD
Faculteit der Natuurwetenschappen, Wiskunde en Informatica
Van 't Hoff Institute for Molecular Sciences
Bezoekadres
- Science Park 904
Postadres
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Postbus 94157
1090 GD Amsterdam
Contactgegevens
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Publicaties
2024
Bade, R., van Herwerden, D., Rousis, N., Adhikari, S., Allen, D., Baduel, C., Bijlsma, L., Boogaerts, T., Burgard, D., Chappell, A., Driver, E. M., Sodre, F. F., Fatta-Kassinos, D., Gracia-Lor, E., Gracia-Marín, E., Halden, R. U., Heath, E., Jaunay, E., Krotulski, A., ... Mueller, J. (2024). Workflow to facilitate the detection of new psychoactive substances and drugs of abuse in influent urban wastewater. Journal of Hazardous Materials, 469, Article 133955. https://doi.org/10.1016/j.jhazmat.2024.133955 [details]- Chen, S., Bade, R., Tscharke, B., Hall, W., Thai, P., He, C., Ahmed, F., Zheng, Q., Choi, P. M., O'Brien, J. W., & Mueller, J. F. (2024). Assessing daily patterns in stimulant use during the COVID-19 pandemic in Melbourne, Australia using wastewater analysis. Journal of Hazardous Materials, 476, Article 135130. https://doi.org/10.1016/j.jhazmat.2024.135130 [details]
- Ciccarelli, D., Samanipour, S., Rapp-Wright, H., Bieber, S., Letzel, T., O’Brien, J. W., Marczylo, T., Gant, T. W., Vineis, P., & Barron, L. P. (2024). Bridging knowledge gaps in human chemical exposure via drinking water with non-target screening. Critical Reviews in Environmental Science and Technology. https://doi.org/10.1080/10643389.2024.2396690
- Li, J., Choi, P. M., Gao, J., Ren, J., O'Brien, J. W., Thomas, K. V., Mueller, J. F., Thai, P. K., & Jiang, G. (2024). In-sewer stability of 31 human health biomarkers and suitability for wastewater-based epidemiology. Water Research, 249, Article 120978. https://doi.org/10.1016/j.watres.2023.120978 [details]
- Samanipour, S., Barron, L. P., van Herwerden, D., Praetorius, A., Thomas, K. V., & O’Brien, J. W. (2024). Exploring the Chemical Space of the Exposome: How Far Have We Gone? JACS AU, 4(7), 2412-2425. https://doi.org/10.1021/jacsau.4c00220 [details]
- van Herwerden, D., Nikolopoulos, A., Barron, L. P., O'Brien, J. W., Pirok, B. W. J., Thomas, K. V., & Samanipour, S. (2024). Exploring the chemical subspace of RPLC: A data driven approach. Analytica Chimica Acta, 1317, Article 342869. https://doi.org/10.1016/j.aca.2024.342869 [details]
2023
- Ahmed, F., Tscharke, B., O’Brien, J. W., Hall, W. D., Cabot, P. J., Sowa, P. M., Samanipour, S., & Thomas, K. V. (2023). National Wastewater Reconnaissance of Analgesic Consumption in Australia. Environmental Science and Technology, 57(4), 1712-1720. https://doi.org/10.1021/acs.est.2c06691 [details]
- Dewapriya, P., Nilsson, S., Ghorbani Gorji, S., O'Brien, J. W., Bräunig, J., Gómez Ramos, M. J., Donaldson, E., Samanipour, S., Martin, J. W., Mueller, J. F., Kaserzon, S. L., & Thomas, K. V. (2023). Novel Per- and Polyfluoroalkyl Substances Discovered in Cattle Exposed to AFFF-Impacted Groundwater. Environmental Science and Technology, 57(36), 13635-13645. https://doi.org/10.1021/acs.est.3c03852 [details]
- Feraud, M., O'Brien, J. W., Samanipour, S., Dewapriya, P., van Herwerden, D., Kaserzon, S., Wood, I., Rauert, C., & Thomas, K. V. (2023). InSpectra - A platform for identifying emerging chemical threats. Journal of Hazardous Materials, 455, Article 131486. https://doi.org/10.1016/j.jhazmat.2023.131486 [details]
- Hulleman, T., Turkina, V., O'Brien, J. W., Chojnacka, A., Thomas, K. V., & Samanipour, S. (2023). Critical Assessment of the Chemical Space Covered by LC-HRMS Non-Targeted Analysis. Environmental Science and Technology, 57(38), 14101-14492. https://doi.org/10.1021/acs.est.3c03606 [details]
- Li, J., Shimko, K. M., He, C., Patterson, B., Bade, R., Shiels, R., Mueller, J. F., Thomas, K. V., & O'Brien, J. W. (2023). Direct injection liquid chromatography-tandem mass spectrometry as a sensitive and high-throughput method for the quantitative surveillance of antimicrobials in wastewater. Science of the Total Environment, 900, Article 165825. https://doi.org/10.1016/j.scitotenv.2023.165825 [details]
- Samanipour, S., O'Brien, J. W., Reid, M. J., Thomas, K. V., & Praetorius, A. (2023). From Molecular Descriptors to Intrinsic Fish Toxicity of Chemicals: An Alternative Approach to Chemical Prioritization. Environmental Science and Technology, 57(46), 17950-17958. https://doi.org/10.1021/acs.est.2c07353 [details]
- van Herwerden, D., O'Brien, J. W., Lege, S., Pirok, B. W. J., Thomas, K. V., & Samanipour, S. (2023). Cumulative Neutral Loss Model for Fragment Deconvolution in Electrospray Ionization High-Resolution Mass Spectrometry Data. Analytical Chemistry, 95(33), 12247-12255. https://doi.org/10.1021/acs.analchem.3c00896 [details]
2022
- Mohammed Taha, H., O'Brien, J., Samanipour, S., van Wezel, A. P., & The NORMAN Association (2022). The NORMAN Suspect List Exchange (NORMAN-SLE): facilitating European and worldwide collaboration on suspect screening in high resolution mass spectrometry. Environmental Sciences Europe, 34, Article 104. https://doi.org/10.1186/s12302-022-00680-6 [details]
- Rousis, N. I., Li, Z., Bade, R., McLachlan, M. S., Mueller, J. F., O'Brien, J. W., Samanipour, S., Tscharke, B. J., Thomaidis, N. S., & Thomas, K. V. (2022). Socioeconomic status and public health in Australia: A wastewater-based study. Environment International, 167, Article 107436. https://doi.org/10.1016/j.envint.2022.107436 [details]
- Shimko, K. M., O'Brien, J. W., Li, J., Tscharke, B. J., Brooker, L., Thai, P. K., Choi, P. M., Samanipour, S., & Thomas, K. V. (2022). In-Sewer Stability Assessment of Anabolic Steroids and Selective Androgen Receptor Modulators. Environmental Science and Technology, 56(3), 1627-1638. https://doi.org/10.1021/acs.est.1c03047 [details]
- van Herwerden, D., O'Brien, J. W., Choi, P. M., Thomas, K. V., Schoenmakers, P., & Samanipour, S. (2022). Naive Bayes classification model for isotopologue detection in LC-HRMS data. Chemometrics and Intelligent Laboratory Systems, 223, Article 104515. https://doi.org/10.1016/j.chemolab.2022.104515 [details]
2021
- Ahmed, F., Li, J., O'Brien, J. W., Tscharke, B. J., Samanipour, S., Thai, P. K., Yuan, Z., Mueller, J. F., & Thomas, K. V. (2021). In-sewer stability of selected analgesics and their metabolites. Water Research, 204, Article 117647. https://doi.org/10.1016/j.watres.2021.117647 [details]
- Dessi, C., Okoffo, E. D., O'Brien, J., Gallen, M., Samanipour, S., Kaserzon, S., Rauert, C., Wang, X., & Thom, K. V. (2021). Plastics contamination of store-bought rice. Journal of Hazardous Materials, 416, Article 125778. https://doi.org/10.1016/j.jhazmat.2021.125778 [details]
- Okoffo, E. D., Donner, E., McGrath, S., Tscharke, B., O'Brien, J. W., O'Brien, S., Ribeiro, F., Burrows, S., Toapanta, T., Rauert, C., Samanipour, S., Mueller, J. F., & Thomas, K. V. (2021). Plastics in biosolids from 1950 to 2016: A function of global plastic production and consumption. Water Research, 201, Article 117367. https://doi.org/10.1016/j.watres.2021.117367 [details]
- Ribeiro, F., Okoffo, E. D., O'Brien, J. W., O'Brien, S., Harris, J. M., Samanipour, S., Kaserzon, S., Mueller, J. F., Galloway, T., & Thomas, K. (2021). Out of sight but not out of mind: size fractionation of plastics bioaccumulated by field deployed oysters. Journal of Hazardous Materials Letters, 2, Article 100021. https://doi.org/10.1016/j.hazl.2021.100021 [details]
- Samanipour, S., Choi, P., O'Brien, J. W., Pirok, B. W. J., Reid, M. J., & Thomas, K. V. (2021). From Centroided to Profile Mode: Machine Learning for Prediction of Peak Width in HRMS Data. Analytical Chemistry, 93(49), 16562–16570. https://doi.org/10.1021/acs.analchem.1c03755 [details]
2020
- Ahmed, F., Tscharke, B., O'Brien, J., Thompson, J., Samanipour, S., Choi, P., Li, J., Mueller, J. F., & Thomas, K. (2020). Wastewater-based estimation of the prevalence of gout in Australia. Science of the Total Environment, 715. https://doi.org/10.1016/j.scitotenv.2020.136925
- Choi, P. M., O'Brien, J. W., Tscharke, B. J., Mueller, J. F., Thomas, K. V., & Samanipour, S. (2020). Population Socioeconomics Predicted Using Wastewater. Environmental Science and Technology, 7(8), 567–572. https://doi.org/10.1021/acs.estlett.0c00392 [details]
- González-Mariño, I., Baz-Lomba, J. A., Alygizakis, N. A., Andrés-Costa, M. J., Bade, R., Barron, L. P., Been, F., Berset, J.-D., Bijlsma, L., Bodík, I., Brenner, A., Brock, A. L., Burgard, D. A., Castrignanò, E., Christophoridis, C. E., Covaci, A., de Voogt, P., Devault, D. A., Dias, M. J., ... Ort, C. (2020). Spatio-temporal assessment of illicit drug use at large scale: evidence from 7 years of international wastewater monitoring. Addiction, 115(1), 109-120. https://doi.org/10.1111/add.14767 [details]
- Goulding, N., Hickman, M., Reid, M., Amundsen, E. J., Baz-Lomba, J. A., O'Brien, J. W., Tscharke, B. J., de Voogt, P., Emke, E., Kuijpers, W., Hall, W., & Jones, H. E. (2020). A comparison of trends in wastewater-based data and traditional epidemiological indicators of stimulant consumption in three locations. Addiction, 115(3), 462-472. https://doi.org/10.1111/add.14852 [details]
- O'Brien, S., Okoffo, E. D., O'Brien, J., Ribeiro, F., Wang, X., Wright, S. L., Samanipour, S., Rauert, C., Toapanta, T. Y. A., Albarracin, R., & Thomas, K. V. (2020). Airborne emissions of microplastic fibres from domestic laundry dryers. Science of the Total Environment, 747, Article 141175. https://doi.org/10.1016/j.scitotenv.2020.141175 [details]
- Okoffo, E. D., Ribeiro, F., O'Brien, J. W., O'Brien, S., Tscharke, B. J., Gallen, M., Samanipour, S., Mueller, J. F., & Thomas, K. V. (2020). Identification and quantification of selected plastics in biosolids by pressurized liquid extraction combined with double-shot pyrolysis gas chromatography-mass spectrometry. Science of the Total Environment, 715. https://doi.org/10.1016/j.scitotenv.2020.136924
- Ribeiro, F., Okoffo, E. D., O'Brien, J. W., Fraissinet-Tachet, S., O'Brien, S., Gallen, M., Samanipour, S., Kaserzon, S., Mueller, J. F., Galloway, T., & Thomas, K. V. (2020). Correction to Quantitative Analysis of Selected Plastics in High-Commercial-Value Australian Seafood by Pyrolysis Gas Chromatography Mass Spectrometry. Environmental Science and Technology, 54(20), 13364. https://doi.org/10.1021/acs.est.0c05885
- Ribeiro, F., Okoffo, E. D., O'Brien, J. W., Fraissinet-Tachet, S., O'Brien, S., Gallen, M., Samanipour, S., Kaserzon, S., Mueller, J. F., Galloway, T., & Thomas, K. V. (2020). Quantitative analysis of selected plastics in high commercial value Australian seafood by Pyrolysis Gas Chromatography Mass Spectrometry. Environmental Science and Technology, 54(15), 9408–9417. https://doi.org/10.1021/acs.est.0c02337 [details]
- Schulze, B., Jeon, Y., Kaserzon, S., Heffernan, A. L., Dewapriya, P., O'Brien, J., Gomez Ramos , M. J., Ghorbani Gorji, S., Mueller, J. F., Thomas, K. V., & Samanipour, S. (2020). An assessment of Quality Assurance/Quality Control Efforts in High Resolution Mass Spectrometry Non-Target Workflows for Analysis of Environmental Samples. TrAC Trends in Analytical Chemistry, 133, Article 116063. https://doi.org/10.1016/j.trac.2020.116063 [details]
2019
- Choi, P. M., Tscharke, B., Samanipour, S., Hall, W. D., Gartner, C. E., Mueller, J. F., Thomas, K. V., & O'Brien, J. W. (2019). Social, demographic, and economic correlates of food and chemical consumption measured by wastewater-based epidemiology. Proceedings of the National Academy of Sciences of the United States of America, 116(43), 21864-21873. https://doi.org/10.1073/pnas.1910242116
- Samanipour, S., O'Brien, J. W., Reid, M. J., & Thomas V, K. (2019). Self Adjusting Algorithm for the Nontargeted Feature Detection of High Resolution Mass Spectrometry Coupled with Liquid Chromatography Profile Data. Analytical Chemistry, 91(16), 10800-10807. https://doi.org/10.1021/acs.analchem.9b02422
2018
- van Nuijs, A. L. N., Lai, F. Y., Been, F., Andres-Costa, M. J., Barron, L., Baz-Lomba, J. A., Berset, J.-D., Benaglia, L., Bijlsma, L., Burgard, D. A., Castiglioni, S., Christophoridis, C., Covaci, A., de Voogt, P., Emke, E., Fatta-Kassinos, D., Fick, J., Hernandez, F., Gerber, C., ... Ort, C. (2018). Multiyear inter-laboratory exercises for the analysis of illicit drugs and metabolites in wastewater: development of a quality control system. Trends in Analytical Chemistry, 103, 34-43. https://doi.org/10.1016/j.trac.2018.03.009 [details]
2016
- Ryu, Y., Barceló, D., Barron, L. P., Bijlsma, L., Castiglioni, S., de Voogt, P., Emke, E., Hernández, F., Lai, F. Y., Lopes, A., López de Alda, M., Mastroianni, N., Munro, K., O'Brien, J., Ort, C., Plósz, B. G., Reid, M. J., Yargeau, V., & Thomas, K. V. (2016). Comparative measurement and quantitative risk assessment of alcohol consumption through wastewater-based epidemiology: An international study in 20 cities. Science of the Total Environment, 565, 977-983. https://doi.org/10.1016/j.scitotenv.2016.04.138 [details]
2020
- Ribeiro, F., Okoffo, E. D., O'Brien, J. W., Fraissinet-Tachet, S., O'Brien, S., Gallen, M., Samanipour, S., Kaserzon, S., Mueller, J. F., Galloway, T., & Thomas, K. V. (2020). Response to Comment on “Quantitative Analysis of Selected Plastics in High-Commercial-Value Australian Seafood by Pyrolysis Gas Chromatography Mass Spectrometry”. Environmental Science and Technology, 54(23), 15556–15557. https://doi.org/10.1021/acs.est.0c07097 [details]
2024
- Thomas, K. V., Haddad, P. R., O'Brien, J., Samanipour, S., Okoffo, E. & Hulleman, T. (13-9-2024). Data for: Machine learning for predicting environmental mobility based on retention behaviour. Zenodo. https://doi.org/10.5281/zenodo.13756045
2023
- Dewapriya, P., Nilsson, S., Gorji, S., O'Brien, J. W., Bräunig, J., Ramos, M., Donaldson, E., Samanipour, S., Martin, J. W., Martine, J. F. ., Kaserzon, S. L. & Thomas, K. V. (8-5-2023). Novel Per- and Polyfluoroalkyl Substances Discovered in Cattle Exposed to AFFF-Impacted Groundwater. Zenodo. https://doi.org/10.5281/zenodo.7905643
2022
- Mohammed Taha, H., Aalizadeh, R., Alygizakis, N., Antignac, J.-P., Arp, H. H., Bade, R., Baker, N., Belova, L., Bijlsma, L., Bolton, E. E., Brack, W., Celma, A., Chen, W.-L., Cheng, T., Chirsir, P., Čirka, Ľ., D’Agostino, L. A., Djoumbou Feunang, Y., Dulio, V., … Schymanski, E. L. (2022). Additional file 3 of The NORMAN Suspect List Exchange (NORMAN-SLE): facilitating European and worldwide collaboration on suspect screening in high resolution mass spectrometry. Springer Nature. https://doi.org/10.6084/m9.figshare.21382490.v1
- Mohammed Taha, H., Aalizadeh, R., Alygizakis, N., Antignac, J.-P., Arp, H. H., Bade, R., Baker, N., Belova, L., Bijlsma, L., Bolton, E. E., Brack, W., Celma, A., Chen, W.-L., Cheng, T., Chirsir, P., Čirka, Ľ., D’Agostino, L. A., Djoumbou Feunang, Y., Dulio, V., … Schymanski, E. L. (2022). Additional file 4 of The NORMAN Suspect List Exchange (NORMAN-SLE): facilitating European and worldwide collaboration on suspect screening in high resolution mass spectrometry. Springer Nature. https://doi.org/10.6084/m9.figshare.21382496.v1
- Mohammed Taha, H., Aalizadeh, R., Alygizakis, N., Antignac, J.-P., Arp, H. H., Bade, R., Baker, N., Belova, L., Bijlsma, L., Bolton, E. E., Brack, W., Celma, A., Chen, W.-L., Cheng, T., Chirsir, P., Čirka, Ľ., D’Agostino, L. A., Djoumbou Feunang, Y., Dulio, V., … Schymanski, E. L. (2022). Additional file 1 of The NORMAN Suspect List Exchange (NORMAN-SLE): facilitating European and worldwide collaboration on suspect screening in high resolution mass spectrometry. Springer Nature. https://doi.org/10.6084/m9.figshare.21382484.v1
- Mohammed Taha, H., Aalizadeh, R., Alygizakis, N., Antignac, J.-P., Arp, H. H., Bade, R., Baker, N., Belova, L., Bijlsma, L., Bolton, E. E., Brack, W., Celma, A., Chen, W.-L., Cheng, T., Chirsir, P., Čirka, Ľ., D’Agostino, L. A., Djoumbou Feunang, Y., Dulio, V., … Schymanski, E. L. (2022). The NORMAN Suspect List Exchange (NORMAN-SLE): facilitating European and worldwide collaboration on suspect screening in high resolution mass spectrometry. Springer Nature. https://doi.org/10.6084/m9.figshare.c.6261311.v1
- Mohammed Taha, H., Aalizadeh, R., Alygizakis, N., Antignac, J.-P., Arp, H. H., Bade, R., Baker, N., Belova, L., Bijlsma, L., Bolton, E. E., Brack, W., Celma, A., Chen, W.-L., Cheng, T., Chirsir, P., Čirka, Ľ., D’Agostino, L. A., Djoumbou Feunang, Y., Dulio, V., … Schymanski, E. L. (2022). Additional file 5 of The NORMAN Suspect List Exchange (NORMAN-SLE): facilitating European and worldwide collaboration on suspect screening in high resolution mass spectrometry. Springer Nature. https://doi.org/10.6084/m9.figshare.21382502.v1
2019
- Fick, J., Berset, J.-D., Slobodnik, J., Bijlsma, L., Löve, A. S. C., Lindberg, R. H., Hernandez, F., Béen, F., Baz-Lomba, J., Racamonde, I., Bade, R., Terzic, S., Meierjohann, A., Yargeau, V., Fatta-Kassinos, D., Christophoridis, C., Kasprzyk-Hordern, B., Thomas, K. V., Karolak, S., … Östman, M. (1-1-2019). Illicit drugs in wastewater - SCORE initiative. EAWAG Research Data Management. https://doi.org/10.25678/000172
This list of publications is extracted from the UvA-Current Research Information System. Questions? Ask the library or the Pure staff of your faculty / institute. Log in to Pure to edit your publications. Log in to Personal Page Publication Selection tool to manage the visibility of your publications on this list. -
Nevenwerkzaamheden
Geen nevenwerkzaamheden
Bade, R., van Herwerden, D., Rousis, N., Adhikari, S., Allen, D., Baduel, C., Bijlsma, L., Boogaerts, T., Burgard, D., Chappell, A., Driver, E. M., Sodre, F. F., Fatta-Kassinos, D., Gracia-Lor, E., Gracia-Marín, E., Halden, R. U., Heath, E., Jaunay, E., Krotulski, A., ... Mueller, J. (2024). Workflow to facilitate the detection of new psychoactive substances and drugs of abuse in influent urban wastewater. Journal of Hazardous Materials, 469, Article 133955.