Prof. dr. P.J. (Pernette) Verschure
Faculteit der Natuurwetenschappen, Wiskunde en Informatica
Swammerdam Institute for Life Sciences
Bezoekadres
- Science Park 904
- Kamernummer: C2.106
Postadres
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Postbus 1212
1000 BE Amsterdam
Contactgegevens
Social media
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Publicaties
- refereed (26)
- wetenschappelijk (1)
- populair wetenschappelijk (1)
- erkenning (1)
- supervised theses (1)
- datasets (14)
2024
- Koncz, M., Lermo Jimenez, M. A., Piebes, D. G. E., Postma, M., & Verschure, P. J. (2024). Single-Molecule Analysis of Transcription Dynamics to Understand the Relationship Between Epigenetic Alterations and Transcriptional Variability. In A. Jeltsch, & M. G. Rots (Eds.), Epigenome Editing: Methods and Protocols (pp. 449-460). (Methods in molecular biology (Clifton, N.J.); Vol. 2842). Humana Press. https://doi.org/10.1007/978-1-0716-4051-7_23 [details]
- Sarno, F., Koncz, M., Eilers, R. E., Verschure, P. J., & Rots, M. G. (2024). Generation of Cell Lines Stably Expressing a dCas9-Fusion or sgRNA to Address Dynamics of Long-Term Effects of Epigenetic Editing. In A. Jeltsch, & M. G. Rots (Eds.), Epigenome Editing: Methods and Protocols (2nd ed., pp. 289-307). (Methods in molecular biology; Vol. 2842). Humana Press. https://doi.org/10.1007/978-1-0716-4051-7_15 [details]
- van den Berg van Saparoea, A. C. H., van Loosen, Q. C., Sarno, F., Ntini, E., Rots, M. G., Gjaltema, R. A. F., & Verschure, P. J. (2024). Plasmid Delivery and Single-Cell Plasmid Expression Analysis for CRISPR/dCas9-Based Epigenetic Editing. In A. Jeltsch, & M. G. Rots (Eds.), Epigenome Editing: Methods and Protocols (pp. 255-265). (Methods in molecular biology (Clifton, N.J.); Vol. 2842). Humana Press. https://doi.org/10.1007/978-1-0716-4051-7_13 [details]
2023
Sarno, F., Goubert, D., Logie, E., Rutten, M. G. S., Koncz, M., Deben, C., Niemarkt, A. E., Altucci, L., Verschure, P. J., Kiss, A., vanden Berghe, W., & Rots, M. G. (2023). Functional Validation of the Putative Oncogenic Activity of PLAU. Biomedicines, 11(1), Article 102. https://doi.org/10.3390/biomedicines11010102 [details]
2020
- Borgoni, S., Sofyali, E., Soleimani, M., Wilhelm, H., Müller-Decker, K., Will, R., Noronha, A., Beumers, L., Verschure, P. J., Yarden, Y., Magnani, L., van Kampen, A. H. C., Moerland, P. D., & Wiemann, S. (2020). Time-Resolved Profiling Reveals ATF3 as a Novel Mediator of Endocrine Resistance in Breast Cancer. Cancers, 12(10), Article 2918. https://doi.org/10.3390/cancers12102918 [details]
- Gjaltema, R. A. F., Goubert, D., Huisman, C., Del Pilar García Tobilla, C., Koncz, M., Jellema, P. G., Wu, D., Brouwer, U., Kiss, A., Verschure, P. J., Bank, R. A., & Rots, M. G. (2020). KRAB-Induced Heterochromatin Effectively Silences PLOD2 Gene Expression in Somatic Cells and is Resilient to TGFβ1 Activation. International Journal of Molecular Sciences, 21(10), Article 3634. https://doi.org/10.3390/ijms21103634 [details]
- Mandemaker, I. K., Zhou, D., Bruens, S. T., Dekkers, D. H., Verschure, P. J., Edupuganti, R. R., Meshorer, E., Demmers, J. A. A., & Marteijn, J. A. (2020). Histone H1 eviction by the histone chaperone SET reduces cell survival following DNA damage. Journal of Cell Science, 133, Article jcs235473. Advance online publication. https://doi.org/10.1242/jcs.235473 [details]
- Soleimani Dodaran, M., Borgoni, S., Sofyali, E., Verschure, P. J., Wiemann, S., Moerland, P. D., & van Kampen, A. H. C. (2020). Candidate methylation sites associated with endocrine therapy resistance in ER+/HER2-breast cancer. BMC Cancer, 20, Article 676. https://doi.org/10.1186/s12885-020-07100-z [details]
2018
- Beckman, W., Vuist, I. M., Kempe, H., & Verschure, P. J. (2018). Cell-to-Cell Transcription Variability as Measured by Single-Molecule RNA FISH to Detect Epigenetic State Switching. In A. Jeltsch, & M. G. Rots (Eds.), Epigenome Editing: Methods and Protocols (pp. 385-393). (Methods in Molecular Biology). Humana Press. https://doi.org/10.1007/978-1-4939-7774-1_21 [details]
- Naue, J., Hoefsloot, H. C. J., Kloosterman, A. D., & Verschure, P. J. (2018). Forensic DNA methylation profiling from minimal traces: How low can we go? Forensic Science International. Genetics, 33, 17-23. https://doi.org/10.1016/j.fsigen.2017.11.004 [details]
- Naue, J., Sänger, T., Hoefsloot, H. C. J., Lutz-Bonengel, S., Kloosterman, A. D., & Verschure, P. J. (2018). Proof of concept study of age-dependent DNA methylation markers across different tissues by massive parallel sequencing. Forensic Science International. Genetics, 36, 152-159. https://doi.org/10.1016/j.fsigen.2018.07.007 [details]
2017
- Goubert, D., Beckman, W. F., Verschure, P. J., & Rots, M. G. (2017). Epigenetic editing: towards realization of the curable genome concept. Convergent Science Physical Oncology, 3(1), Article 013006. https://doi.org/10.1088/2057-1739/aa5cc0 [details]
- Magnani, L., Frigè, G., Gadaleta, R. M., Corleone, G., Fabris, S., Kempe, H., Verschure, P. J., Barozzi, I., Vircillo, V., Hong, S. P., Perone, Y., Saini, M., Trumpp, A., Viale, G., Neri, A., Ali, S., Colleoni, M. A., Pruneri, G., & Minucci, S. (2017). Acquired CYP19A1 amplification is an early specific mechanism of aromatase inhibitor resistance in ERα metastatic breast cancer. Nature genetics, 49(3), 444-450. https://doi.org/10.1038/ng.3773 [details]
- Naue, J., Hoefsloot, H. C. J., Mook, O. R. F., Rijlaarsdam-Hoekstra, L., van der Zwalm, M. C. H., Henneman, P., Kloosterman, A. D., & Verschure, P. J. (2017). Chronological age prediction based on DNA methylation: Massive parallel sequencing and random forest regression. Forensic Science International. Genetics, 31, 19-28. https://doi.org/10.1016/j.fsigen.2017.07.015 [details]
- van Hagen, M., Piebes, D. G. E., de Leeuw, W. C., Vuist, I. M., van Roon-Mom, W. M. C., Moerland, P. D., & Verschure, P. J. (2017). The dynamics of early-state transcriptional changes and aggregate formation in a Huntington's disease cell model. BMC Genomics, 18(373), Article 373. https://doi.org/10.1186/s12864-017-3745-z [details]
2016
- Hoeijmakers, L., Kempe, H., & Verschure, P. J. (2016). Epigenetic imprinting during assisted reproductive technologies: The effect of temporal and cumulative fluctuations in methionine cycling on the DNA methylation state. Molecular Reproduction and Development, 83(2), 94-107. Advance online publication. https://doi.org/10.1002/mrd.22605 [details]
- Wijchers, P. J., Krijger, P. H. L., Geeven, G., Zhu, Y., Denker, A., Verstegen, M. J. A. M., Valdes-Quezada, C., Vermeulen, C., Janssen, M., Teunissen, H., Anink-Groenen, L. C. M., Verschure, P. J., & de Laat, W. (2016). Cause and Consequence of Tethering a SubTAD to Different Nuclear Compartments. Molecular Cell, 61(3), 461-473. https://doi.org/10.1016/j.molcel.2016.01.001 [details]
2015
- Kempe, H., Schwabe, A., Crémazy, F., Verschure, P. J., & Bruggeman, F. J. (2015). The volumes and transcript counts of single cells reveal concentration homeostasis and capture biological noise. Molecular Biology of the Cell, 26(4), 797-804. https://doi.org/10.1091/mbc.E14-08-1296 [details]
2014
- Anink-Groenen, L. C. M., Maarleveld, T. R., Verschure, P. J., & Bruggeman, F. J. (2014). Mechanistic stochastic model of histone modification pattern formation. Epigenetics & Chromatin, 7, 30. https://doi.org/10.1186/1756-8935-7-30 [details]
2013
- Brink, M. C., Piebes, D. G. E., de Groote, M. L., Luijsterburg, M. S., Casas-Delucchi, C. S., van Driel, R., Rots, M. G., Cardoso, M. C., & Verschure, P. J. (2013). A role for MeCP2 in switching gene activity via chromatin unfolding and HP1γ displacement. PLoS ONE, 8(7), e69347. https://doi.org/10.1371/journal.pone.0069347 [details]
- Muraro, M. J., Kempe, H., & Verschure, P. J. (2013). Concise Review: The Dynamics of Induced Pluripotency and Its Behavior Captured in Gene Network Motifs. Stem Cells, 31(5), 838-848. Advance online publication. https://doi.org/10.1002/stem.1340 [details]
2012
- de Groote, M. L., Verschure, P. J., & Rots, M. G. (2012). Epigenetic Editing: targeted rewriting of epigenetic marks to modulate expression of selected target genes. Nucleic Acids Research, 40(21), 10596-10613. https://doi.org/10.1093/nar/gks863 [details]
2011
- Schwabe, A., Dobrzynski, M., Rybakova, E., Verschure, P. J., & Bruggeman, F. J. (2011). Origins of stochastic intracellular processes and consequences for cell-to-cell variability and cellular survival strategies. Methods in Enzymology, 500, 597-625. https://doi.org/10.1016/B978-0-12-385118-5.00028-1 [details]
2010
- Scassellati, C., Albi, E., Cmarko, D., Tiberi, C., Cmarkova, J., Bouchet‑Marquis, C., Verschure, P. J., van Driel, R., Viola Magni, M., & Fakan, S. (2010). Intranuclear sphingomyelin is associated with transcriptionally active chromatin and plays a role in nuclear integrity. Biology of the Cell, 102(6), 361-375. https://doi.org/10.1042/BC20090139 [details]
2009
- Luijsterburg, M. S., Dinant, C., Lans, H., Stap, J., Wiernasz, E. S., Lagerwerf, S., Warmerdam, D. O., Lindh, M., Brink, M. C., Dobrucki, J. W., Aten, J. A., Fousteri, M. I., Jansen, G., Dantuma, N. P., Vermeulen, W., Mullenders, L. H. F., Houtsmuller, A. B., Verschure, P. J., & van Driel, R. (2009). Heterochromatin protein 1 is recruited to various types of DNA damage. Journal of Cell Biology, 185(4), 577-586. https://doi.org/10.1083/jcb.200810035 [details]
- Mateos-Langerak, J., Bohn, M., de Leeuw, W., Giromus, O., Manders, E. M. M., Verschure, P. J., Indemans, M. H. G., Gierman, H. J., Heermann, D. W., van Driel, R., & Goetze, S. (2009). Spatially confined folding of chromatin in the interphase nucleus. Proceedings of the National Academy of Sciences of the United States of America, 106(10), 3812-3817. https://doi.org/10.1073/pnas.0809501106 [details]
2002
- Sanchez-Montanes, M. A., Konig, P., & Verschure, P. J. (2002). Learning sensory maps with real-world stimuli in real time using a biophysically realistic learning rule. IEEE Transactions on Neural Networks, 13(3), 619-32. https://doi.org/10.1109/TNN.2002.1000128
2015
- Verschure, P. J. (2015). Hormoonresistentie mammacarcinoom te voorspellen met epigenetica en systems medicine. Oncologie Up-to-date, 6(4). http://www.oncologie.nu/nieuws/1720-hormoonresistentie-mammacarcinoom-te-voorspellen-met-epigenetica-en-systems-medicine.html
Spreker
- Verschure, P. J. (speaker) (14-4-2011). Wie ben ik, wat onderzoek ik, waarom is wetenschappelijk onderzoek zo interessant, Girlsday VHTO, Amsterdam, the Netherlands.
2020
- Soleimani Dodaran, M., Sofyall, E., Verschure, P. J., Van Kampen, A. H. C., Borgoni, S., Wiemann, S. & Moerland, P. D. (2020). Additional file 2 of Candidate methylation sites associated with endocrine therapy resistance in ER+/HER2- breast cancer. Figshare. https://doi.org/10.6084/m9.figshare.12673815.v1
- Soleimani Dodaran, M., Sofyall, E., Verschure, P. J., Van Kampen, A. H. C., Borgoni, S., Wiemann, S. & Moerland, P. D. (2020). Additional file 14 of Candidate methylation sites associated with endocrine therapy resistance in ER+/HER2- breast cancer. Figshare. https://doi.org/10.6084/m9.figshare.12673806.v1
- Soleimani Dodaran, M., Sofyall, E., Verschure, P. J., Van Kampen, A. H. C., Borgoni, S., Wiemann, S. & Moerland, P. D. (2020). Additional file 1 of Candidate methylation sites associated with endocrine therapy resistance in ER+/HER2- breast cancer. Figshare. https://doi.org/10.6084/m9.figshare.12673812.v1
- Soleimani Dodaran, M., Borgoni, S., Sofyall, E., Verschure, P. J., Wiemann, S., Moerland, P. D. & Van Kampen, A. H. C. (2020). Candidate methylation sites associated with endocrine therapy resistance in ER+/HER2- breast cancer. Springer Nature. https://doi.org/10.6084/m9.figshare.c.5067306.v1
- Soleimani Dodaran, M., Sofyall, E., Verschure, P. J., Van Kampen, A. H. C., Borgoni, S., Wiemann, S. & Moerland, P. D. (2020). Additional file 10 of Candidate methylation sites associated with endocrine therapy resistance in ER+/HER2- breast cancer. Figshare. https://doi.org/10.6084/m9.figshare.12673794.v1
- Soleimani Dodaran, M., Sofyall, E., Verschure, P. J., Van Kampen, A. H. C., Borgoni, S., Wiemann, S. & Moerland, P. D. (2020). Additional file 3 of Candidate methylation sites associated with endocrine therapy resistance in ER+/HER2- breast cancer. Figshare. https://doi.org/10.6084/m9.figshare.12673818.v1
- Soleimani Dodaran, M., Sofyall, E., Verschure, P. J., Van Kampen, A. H. C., Borgoni, S., Wiemann, S. & Moerland, P. D. (2020). Additional file 13 of Candidate methylation sites associated with endocrine therapy resistance in ER+/HER2- breast cancer. Figshare. https://doi.org/10.6084/m9.figshare.12673803.v1
- Soleimani Dodaran, M., Sofyall, E., Verschure, P. J., Van Kampen, A. H. C., Borgoni, S., Wiemann, S. & Moerland, P. (2020). Additional file 4 of Candidate methylation sites associated with endocrine therapy resistance in ER+/HER2- breast cancer. Figshare. https://doi.org/10.6084/m9.figshare.12673821.v1
- Soleimani Dodaran, M., Sofyall, E., Verschure, P. J., Van Kampen, A. H. C., Borgoni, S., Wiemann, S. & Moerland, P. (2020). Additional file 8 of Candidate methylation sites associated with endocrine therapy resistance in ER+/HER2- breast cancer. Figshare. https://doi.org/10.6084/m9.figshare.12673833.v1
- Soleimani Dodaran, M., Sofyall, E., Verschure, P. J., Van Kampen, A. H. C., Borgoni, S., Wiemann, S. & Moerland, P. (2020). Additional file 7 of Candidate methylation sites associated with endocrine therapy resistance in ER+/HER2- breast cancer. Figshare. https://doi.org/10.6084/m9.figshare.12673830.v1
2017
- van Hagen, M., de Leeuw, W. C., van Roon-Mom, W. M. C., Verschure, P. J., Piebes, D., Vuist, I. & Moerland, P. D. (2017). Additional file 5: of The dynamics of early-state transcriptional changes and aggregate formation in a Huntington’s disease cell model. Figshare. https://doi.org/10.6084/m9.figshare.c.3778547_d5.v1
- van Hagen, M., de Leeuw, W. C., van Roon-Mom, W. M. C., Verschure, P. J., Piebes, D., Vuist, I. & Moerland, P. D. (2017). Additional file 2: of The dynamics of early-state transcriptional changes and aggregate formation in a Huntington's disease cell model. Figshare. https://doi.org/10.6084/m9.figshare.c.3778547_d2.v1
- van Hagen, M., de Leeuw, W. C., van Roon-Mom, W. M. C., Verschure, P. J., Piebes, D., Vuist, I. & Moerland, P. D. (2017). Additional file 6: of The dynamics of early-state transcriptional changes and aggregate formation in a Huntington’s disease cell model. Figshare. https://doi.org/10.6084/m9.figshare.c.3778547_d6.v1
- van Hagen, M., de Leeuw, W. C., van Roon-Mom, W. M. C., Verschure, P. J., Piebes, D., Vuist, I. & Moerland, P. (2017). Additional file 4: of The dynamics of early-state transcriptional changes and aggregate formation in a Huntington’s disease cell model. Figshare. https://doi.org/10.6084/m9.figshare.c.3778547_d4.v1
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Nevenwerkzaamheden
- Geen nevenwerkzaamheden
Sarno, F., Goubert, D., Logie, E., Rutten, M. G. S., Koncz, M., Deben, C., Niemarkt, A. E., Altucci, L., Verschure, P. J., Kiss, A., vanden Berghe, W., & Rots, M. G. (2023). Functional Validation of the Putative Oncogenic Activity of PLAU. Biomedicines, 11(1), Article 102.