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S. (Stian) Soiland-Reyes

PhD Candidate
Faculty of Science
Informatics Institute

  • Research and publications
  • Publications

    2022

    • Soiland-Reyes, S., Bayarri, G., Andrio, P., Long, R., Lowe, D., Niewielska, A., Hospital, A., & Groth, P. (2022). Making Canonical Workflow Building Blocks interoperable across workflow languages. Data Intelligence, 4(2), [342–357]. https://doi.org/10.5281/zenodo.5727730, https://doi.org/10.1162/dint_a_00135 [details]
    • Soiland-Reyes, S., Sefton, P., Crosas, M., Castro, L. J., Coppens, F., Fernández, J. M., Garijo, D., Grüning, B., La Rosa, M., Leo, S., Ó Carragáin, E., Portier, M., Trisovic, A., RO-Crate Community, Groth, P., & Goble, C. (2022). Packaging research artefacts with RO-Crate. Data Science, 5(2), 97-138. https://doi.org/10.3233/DS-210053 [details]

    2022

    • Brack, P., Crowther, P., Soiland-Reyes, S., Owen, S., Lowe, D., Williams, A. R., Groom, Q., Dillen, M., Coppens, F., Grüning, B., Eguinoa, I., Ewels, P., & Goble, C. (2022). Ten Simple Rules for making a software tool workflow-ready. PLoS Computational Biology, 18(3), [e1009823]. https://doi.org/10.5281/zenodo.5636487, https://doi.org/10.1371/journal.pcbi.1009823 [details]
    • Crusoe, M. R., Abeln, S., Iosup, A., Amstutz, P., Chilton, J., Tijanić, N., Ménager, H., Soiland-Reyes, S., Gavrilović, B., Goble, C. A., & CWL Community (2022). Methods Included: Standardizing Computational Reuse and Portability with the Common Workflow Language. Communications of the ACM, 65(6), 54-63. https://doi.org/10.1145/3486897
    • Hardisty, A., Brack, P., Goble, C., Livermore, L., Scott, B., Groom, Q., Owen, S., & Soiland-Reyes, S. (2022). The Specimen Data Refinery: A Canonical Workflow Framework and FAIR Digital Object Approach to Speeding up Digital Mobilisation of Natural History Collections. Data Intelligence, 4(2), 320–341. https://doi.org/10.1162/dint_a_00134
    • Soiland-Reyes, S., Bayarri, G., Andrio, P., Long, R., Lowe, D., Niewielska, A., Hospital, A., & Groth, P. (2022). Making Canonical Workflow Building Blocks interoperable across workflow languages. Data Intelligence, 4(2), [342–357]. https://doi.org/10.5281/zenodo.5727730, https://doi.org/10.1162/dint_a_00135 [details]
    • Soiland-Reyes, S., Sefton, P., Crosas, M., Castro, L. J., Coppens, F., Fernández, J. M., Garijo, D., Grüning, B., La Rosa, M., Leo, S., Ó Carragáin, E., Portier, M., Trisovic, A., RO-Crate Community, Groth, P., & Goble, C. (2022). Packaging research artefacts with RO-Crate. Data Science, 5(2), 97-138. https://doi.org/10.3233/DS-210053 [details]

    2021

    • Ferreira da Silva, R., Casanova, H., Chard, K., Altintas, I., Badia, R. M., Balis, B., Coleman, T., Coppens, F., Di Natale, F., Enders, B., Fahringer, T., Filgueira, R., Fursin, G., Garijo, D., Goble, C., Howell, D., Jha, S., Katz, D. S., Laney, D., ... Wolf, M. (2021). A Community Roadmap for Scientific Workflows Research and Development. In 2021 IEEE Workshop on Workflows in Support of Large-Scale Science (WORKS 2021): St. Louis, Missouri, USA, 15 November 2021 (pp. 81-90). IEEE. https://doi.org/10.1109/WORKS54523.2021.00016 [details]
    • Kuhn, T., Taelman, R., Emonet, V., Antonatos, H., Soiland-Reyes, S., & Dumontier, M. (2021). Semantic micro-contributions with decentralized nanopublication services. PeerJ Computer Science, 7, [e387]. https://doi.org/10.7717/peerj-cs.387 [details]
    • Lamprecht, A-L., Palmblad, M., Ison, J., Schwämmle, V., Al Manir, M. S., Altintas, I., Baker, C. J. O., Ben Hadj Amor, A., Capella-Gutierrez, S., Charonyktakis, P., Crusoe, M. R., Gil, Y., Goble, C., Griffin, T. J., Groth, P., Ienasescu, H., Jagtap, P., Kalaš, M., Kasalica, V., ... Wolstencroft, K. (2021). Perspectives on automated composition of workflows in the life sciences. F1000Research, 10, [897]. https://doi.org/10.12688/f1000research.54159.1 [details]
    • Wittner, R., Holub, P., Müller, H., Geiger, J., Goble, C., Soiland-Reyes, S., Pireddu, L., Frexia, F., Mascia, C., Fairweather, E., Swedlow, J. R., Moore, J., Strambio, C., Grunwald, D., & Nakae, H. (2021). ISO 23494: Biotechnology – Provenance Information Model for Biological Specimen And Data. In B. Glavic, V. Braganholo, & D. Koop (Eds.), Provenance and Annotation of Data and Processes: 8th and 9th International Provenance and Annotation Workshop, IPAW 2020 + IPAW 2021, virtual event, July 19–22, 2021 : proceedings (pp. 222-225). (Lecture Notes in Computer Science; Vol. 12839). Springer. https://doi.org/10.5281/zenodo.5004842, https://doi.org/10.1007/978-3-030-80960-7_16 [details]

    2022

    • Geest, P. D., Coppens, F., Soiland-Reyes, S., Eguinoa, I., & Leo, S. (2022). Enhancing RDM in Galaxy by integrating RO-Crate. Research Ideas and Outcomes, 8, [e95164]. https://doi.org/10.3897/rio.8.e95164
    • Soiland-Reyes, S., Castro, L. J., Garijo, D., Portier, M., Goble, C., & Groth, P. (2022). Updating Linked Data practices for FAIR Digital Object principles. Research Ideas and Outcomes, 8, [e94501]. https://doi.org/10.3897/rio.8.e94501
    • Soiland-Reyes, S., Sefton, P., Castro, L. J., Coppens, F., Garijo, D., Leo, S., Portier, M., & Groth, P. (2022). Creating lightweight FAIR Digital Objects with RO-Crate. Research Ideas and Outcomes, 8, [e93937]. https://doi.org/10.3897/rio.8.e93937
    • Woolland, O., Brack, P., Soiland-Reyes, S., Scott, B., & Livermore, L. (2022). Incrementally building FAIR Digital Objects with Specimen Data Refinery workflows. Research Ideas and Outcomes, 8, [e94349]. https://doi.org/10.3897/rio.8.e94349

    2022

    • Soiland-Reyes, S., Sefton, P., Castro, L. J., Coppens, F., Garijo, D., Leo, S., Portier, M., Groth, P., & Goble, C. (2022). Creating lightweight FAIR Digital Objects with RO-Crate and FAIR Signposting. Poster session presented at 1st International Conference on FAIR Digital Objects , Leiden, Netherlands. https://doi.org/10.5281/zenodo.7245315
    • Woolland, O., Brack, P., Soiland-Reyes, S., Scott, B., & Livermore, L. (2022). Incrementally building FAIR Digital Objects with Specimen Data Refinery workflows. Poster session presented at 1st International Conference on FAIR Digital Objects , Leiden, Netherlands. https://doi.org/10.5281/zenodo.7233688

    Membership / relevant position

    Talk / presentation

    2021

    • Goble, C., Soiland-Reyes, S., Bacall, F., Owen, S., Williams, A., Eguinoa, I., Droesbeke, B., Leo, S., Pireddu, L., Rodríguez-Navas, L., Fernández, J. M., Capella-Gutierrez, S., Ménager, H., Grüning, B., Serrano-Solano, B., Ewels, P., & Coppens, F. (2021). Implementing FAIR Digital Objects in the EOSC-Life Workflow Collaboratory. Zenodo. https://doi.org/10.5281/zenodo.4605654
    • Holub, P., Wittner, R., Mascia, C., Frexia, F., Müller, H., Plass, M., Allocca, C., Betsou, F., Burdett, T., Cancio, I., Chapman, A., Chapman, M., Courtot, M., Curcin, V., Eder, J., Elliot, M., Exter, K., Fairweather, E., Goble, C., ... Geiger, J. (2021). Towards a Common Standard for Data and Specimen Provenance in Life Sciences. Zenodo. https://doi.org/10.5281/zenodo.5093125

    2022

    • Soiland-Reyes, S., Sefton, P., Castro, L., Fernández, J., La Rosa, M., Leo, S., Ó Carragáin, E., Portier, M., Trisovic, A., Crosas, M., Coppens, F., Garijo, D., Grüning, B. A., Groth, P. & Goble, C. (10-1-2022). RO-Crate of "Packaging research artefacts with RO-Crate". Zenodo. https://doi.org/10.5281/zenodo.5833456
    • Soiland-Reyes, S. (2022). Facing FAIR challenges with RO-Crate. Zenodo. https://doi.org/10.5281/zenodo.6035230

    2021

    2019

    This list of publications is extracted from the UvA-Current Research Information System. Questions? Ask the library or the Pure staff of your faculty / institute. Log in to Pure to edit your publications. Log in to Personal Page Publication Selection tool to manage the visibility of your publications on this list.
  • Ancillary activities
    No ancillary activities