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Vijaykumar, A., ten Wolde, P. R., & Bolhuis, P. G. (2018). Generalised expressions for the association and dissociation rate constants of molecules with multiple binding sites. Molecular Physics, 116(21-22), 3042-3054. https://doi.org/10.1080/00268976.2018.1473653[details]
Vijaykumar, A., ten Wolde, P. R., & Bolhuis, P. G. (2018). Rate constants for proteins binding to substrates with multiple binding sites using a generalized forward flux sampling expression. Journal of Chemical Physics, 148(12), Article 124109. https://doi.org/10.1063/1.5012854[details]
Vijaykumar, A., Ouldridge, T. E., ten Wolde, P. R., & Bolhuis, P. G. (2017). Multiscale simulations of anisotropic particles combining molecular dynamics and Green's function reaction dynamics. Journal of Chemical Physics, 146(11), Article 114106. https://doi.org/10.1063/1.4977515[details]
Vijaykumar, A., ten Wolde, P. R., & Bolhuis, P. G. (2017). The magnitude of the intrinsic rate constant: How deep can association reactions be in the diffusion limited regime? Journal of Chemical Physics, 147(18), Article 184108. https://doi.org/10.1063/1.5009547[details]
Valeriani, C., Allen, R. J., Morelli, M. J., Frenkel, D., & ten Wolde, P. R. (2007). Computing stationary distributions in equilibrium and nonequilibrium systems with forward flux sampling. Journal of Chemical Physics, 127(11), 114109/1-114109/11. [details]
2006
Allen, R. J., Frenkel, D., & ten Wolde, P. R. (2006). Forward flux sampling-type schemes for simulating rare events: Efficiency analysis. Journal of Chemical Physics, 124(19), 194111/1-194111/17. [details]
Allen, R. J., Frenkel, D., & ten Wolde, P. R. (2006). Simulating rare events in equilibrium or nonequilibrium stochastic systems. Journal of Chemical Physics, 124(2), 024102/1-024102/16. [details]
2005
Moroni, D., ten Wolde, P. R., & Bolhuis, P. G. (2005). Interplay between Structure and Size in a Critical Crystal Nucleus. Physical Review Letters, 94(23), 235703/1-235703/4. [details]
ten Wolde, P. R., & Frenkel, D. (1999). Enhanced protein crystallization around the metastable critical point. Theoretical Chemistry Accounts, 101, 205-208. https://doi.org/10.1007/s002140050430[details]
ten Wolde, P. R., Oxtoby, D. W., & Frenkel, D. (1999). Chain formation in homogeneous gas-liquid nucleation of polar fluids. Journal of Chemical Physics, 111, 4762-4773. [details]
ten Wolde, P. R., Ruiz-Montero, M. J., & Frenkel, D. (1999). Numerical calculation of the rate of homogeneous gas-liquid nucleation in a Lennard-Jones system. Journal of Chemical Physics, 110, 1591-1599. https://doi.org/10.1063/1.477799[details]
2000
Frenkel, D., & ten Wolde, P. R. (2000). From Van der Waals to Protein Crystallization. In M. Lal, R. A. Mashelkar, B. D. Kulkarni, & V. M. Naik (Eds.), Structure and Dynamics of Materials in the Mesoscopic Domain (pp. 139-149). Londen: ICP. [details]
2017
Vijaykumar, A. (2017). Multi-scale simulation of reaction-diffusion systems. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
ten Wolde, P. R. (1998). Gas-liquid flow in pipes and T-junctions. [details]
2009
Valeriani, C., Allen, R. J., Morelli, M. J., Frenkel, D., & ten Wolde, P. R. (2009). Computing stationary distributions in equilibrium and non-equilibrium systems with Forward Flux Sampling. Van 't Hoff Institute for Molecular Sciences. http://arxiv.org/abs/0907.0581[details]
2005
Allen, R. J., Frenkel, D., & ten Wolde, P. R. (2005). Simulating rare events in equilibrium or non-equilibrium stochastic systems. Amsterdam: Instituut voor Technische Scheikunde (oud). [details]
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