Dr. ir. W.C. (Wim) de Leeuw
Faculteit der Natuurwetenschappen, Wiskunde en Informatica
Swammerdam Institute for Life Sciences
Bezoekadres
- Science Park 904
- Kamernummer: C2.201
Postadres
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Postbus 1212
1000 BE Amsterdam
Contactgegevens
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Publicaties
2023
Breit, T. M., Leeuw, W. D., van Olst, M., Ensink, W. A., van Leeuwen, S., Jonker, M. J., & Dekker, R. J. (2023). Genome sequences of 10 new carnation mottle virus variants. Microbiology Resource Announcements, 12(9). https://doi.org/10.1128/MRA.00189-23 [details]- Breit, T. M., de Leeuw, W. C., van Olst, M., Ensink, W. A., van Leeuwen, S., & Dekker, R. J. (2023). Genome Sequence of a New Carnation Small Viroid-Like RNA, CarSV-1. Microbiology Resource Announcements, 12(3). https://doi.org/10.1128/mra.01219-22
- Qi, W., Jonker, M. J., de Leeuw, W., Brul, S., & ter Kuile, B. H. (2023). Reactive oxygen species accelerate de novo acquisition of antibiotic resistance in E. coli. iScience, 26(12), Article 108373. https://doi.org/10.1016/j.isci.2023.108373 [details]
2017
- Rauwerda, H., Pagano, J. F. B., de Leeuw, W. C., Ensink, W., Nehrdich, U., de Jong, M., Jonker, M., Spaink, H. P., & Breit, T. M. (2017). Transcriptome dynamics in early zebrafish embryogenesis determined by high-resolution time course analysis of 180 successive, individual zebrafish embryos. BMC Genomics, 18, Article 287. https://doi.org/10.1186/s12864-017-3672-z [details]
- van Hagen, M., Piebes, D. G. E., de Leeuw, W. C., Vuist, I. M., van Roon-Mom, W. M. C., Moerland, P. D., & Verschure, P. J. (2017). The dynamics of early-state transcriptional changes and aggregate formation in a Huntington's disease cell model. BMC Genomics, 18(373), Article 373. https://doi.org/10.1186/s12864-017-3745-z [details]
2016
- Pagano, J. F. B., Rauwerda, H., de Leeuw, W. C., Wackers, P., de Jong, M., Ensink, W., Dekker, R., Nehrdich, U., Spaink, H. P., Jonker, M., & Breit, T. M. (2016). Transcriptome data on maternal RNA of 24 individual zebrafish eggs from five sibling mothers. Data in Brief, 8, 69-72. Advance online publication. https://doi.org/10.1016/j.dib.2016.04.045 [details]
2015
- Bruning, O., Rauwerda, H., Dekker, R. J., de Leeuw, W. C., Wackers, P. F. K., Ensink, W. A., Jonker, M. J., & Breit, T. M. (2015). Valuable lessons-learned in transcriptomics experimentation. Transcription, 6(3), 51-55. https://doi.org/10.1080/21541264.2015.1064195 [details]
- Locati, M. D., Terpstra, I., de Leeuw, W. C., Kuzak, M., Rauwerda, H., Ensink, W. A., van Leeuwen, S., Nehrdich, U., Spaink, H. P., Jonker, M. J., Breit, T. M., & Dekker, R. J. (2015). Improving small RNA-seq by using a synthetic spike-in set for size-range quality control together with a set for data normalization. Nucleic Acids Research, 43(14), Article e89. Advance online publication. https://doi.org/10.1093/nar/gkv303 [details]
2012
- Marinković, M., de Leeuw, W. C., Ensink, W. A., de Jong, M., Breit, T. M., Admiraal, W., Kraak, M. H. S., & Jonker, M. J. (2012). Gene expression patterns and life cycle responses of toxicant-exposed chironomids. Environmental Science and Technology, 46(22), 12679-12686. https://doi.org/10.1021/es3033617 [details]
- Marinković, M., de Leeuw, W. C., de Jong, M., Kraak, M. H. S., Admiraal, W., Breit, T. M., & Jonker, M. J. (2012). Combining next-generation sequencing and microarray technology into a transcriptomics approach for the non-model organism Chironomus riparius. PLoS ONE, 7(10), e48096. https://doi.org/10.1371/journal.pone.0048096 [details]
2010
- Rauwerda, H., de Jong, M., de Leeuw, W. C., Spaink, H. P., & Breit, T. M. (2010). Integrating heterogeneous sequence information for transcriptome-wide microarray design; a Zebrafish example. BMC Research Notes, 3, 192. https://doi.org/10.1186/1756-0500-3-192 [details]
2009
- de Leeuw, W. C., Rauwerda, H., Inda, M. A., Bruning, O., & Breit, T. M. (2009). SigWinR; the SigWin-detector updated and ported to R. BMC Research Notes, 2(1), Article 205. https://doi.org/10.1186/1756-0500-2-205 [details]
2008
- de Leeuw, W. C., Rauwerda, H., Jonker, M. J., & Breit, T. M. (2008). Salvaging Affymetrix probes after probe-level re-annotation. BMC Research Notes, 1, Article 66. https://doi.org/10.1186/1756-0500-1-66 [details]
2007
- Rauwerda, H., de Leeuw, W. C., Adriaanse, J., Bouwhuis, M., van der Vet, P., & Breit, T. M. (2007). The role of e-BioLabs in a life sciences collaborative working environment. In Proceedings Conference e-Challenges [details]
2003
- Manders, E. M. M., Visser, A. E., Koppen, A., de Leeuw, W. C., van Liere, R., Brakenhoff, G. J., & van Driel, R. (2003). Four-dimensional imaging of chromatin dynamics during the assembly of the interphase nucleus. Chromosome Research, 11, 537-547. https://doi.org/10.1023/A:1024995215340 [details]
2022
- Rauwerda, H., Pagano, J. F. B., de Leeuw, W. C., Ensink, W., van Olst, M., Nehrdich, U., Jonker, M. J., Spaink, H. P., & Breit, T. M. (2022). Cellular Factors Involved in Transcriptome Dynamics in Early Zebrafish Embryogenesis. (v1 ed.) BioRxiv. https://doi.org/10.1101/2022.09.29.510050 [details]
2020
- Pagano, J. F. B., Locati, M. D., Ensink, W. A., van Olst, M., van Leeuwen, S., de Leeuw, W. C., Nehrdich, U., Spaink, H. P., Rauwerda, H., Jonker, M. J., Dekker, R. J., & Breit, T. M. (2020). Maternal- and Somatic-type snoRNA Expression and Processing in Zebrafish Development. (v3 ed.) BioRxiv. https://doi.org/10.1101/858936 [details]
2019
- Breit, T. M., Pagano, J. F. B., van der Jagt, P. L., Mittring, E., Ensink, W. A., van Olst, M., van Leeuwen, S., de Leeuw, W., Nehrdich, U., Spaink, H. P., Rauwerda, H., & Dekker, R. J. (2019). New observations on non-coding RNAs involved in the dual translation system in zebrafish development. (v2 ed.) BioRxiv. https://doi.org/10.1101/869651 [details]
- Pagano, J. F. B., Dekker, R. J., Ensink, W. A., van Olst, M., Bos, A., van Leeuwen, S., de Leeuw, W. C., Nehrdich, U., Spaink, H. P., Rauwerda, H., Jonker, M. J., & Breit, T. M. (2019). An alternative spliceosome defined by distinct snRNAs in early zebrafish embryogenesis. (v1 ed.) BioRxiv. https://doi.org/10.1101/858944 [details]
2014
- Jonker, M. J., de Leeuw, W. C., Marinković, M., Wittink, F. R. A., Rauwerda, H., Bruning, O., Ensink, W. A., Fluit, A. C., Boel, C. H., de Jong, M., & Breit, T. M. (2014). Absence/presence calling in microarray-based CGH experiments with non-model organisms. Nucleic Acids Research, 42(11), e94. https://doi.org/10.1093/nar/gku343 [details]
2012
- Marinkovic, M., de Leeuw, W. C., de Jong, M., Admiraal, W., Breit, T. M., Kraak, M. H. S., & Jonker, M. J. (2012). Sequencing the Chironomus riparius transcriptome to compare the sensitivity of gene expression and life-cycle endpoints to toxicant exposure.. Abstract from 6th SETAC World Congress/SETAC Europe 22nd Annual Meeting, Berlin, Germany, May 2012. http://berlin.setac.eu/embed/Berlin/ET_extended_abstracts_Part1.pdf
2017
- van Hagen, M., de Leeuw, W. C., van Roon-Mom, W. M. C., Verschure, P. J., Piebes, D. G. E., Vuist, I. M., Moerland, P. D. & Roon-Mom, W. (2017). Additional file 5: of The dynamics of early-state transcriptional changes and aggregate formation in a Huntington’s disease cell model. Figshare. https://doi.org/10.6084/m9.figshare.c.3778547_d5
- van Hagen, M., de Leeuw, W. C., van Roon-Mom, W. M. C., Verschure, P. J., Piebes, D. G. E., Vuist, I. M., Moerland, P. D. & Roon-Mom, W. (2017). Additional file 5: of The dynamics of early-state transcriptional changes and aggregate formation in a Huntington’s disease cell model. Figshare. https://doi.org/10.6084/m9.figshare.c.3778547_d5.v1
- van Hagen, M., de Leeuw, W. C., van Roon-Mom, W. M. C., Verschure, P. J., Piebes, D. G. E., Vuist, I. M., Moerland, P. D. & Roon-Mom, W. (2017). Additional file 6: of The dynamics of early-state transcriptional changes and aggregate formation in a Huntington’s disease cell model. Figshare. https://doi.org/10.6084/m9.figshare.c.3778547_d6
- van Hagen, M., de Leeuw, W. C., van Roon-Mom, W. M. C., Verschure, P. J., Piebes, D. G. E., Vuist, I. M., Moerland, P. D. & Roon-Mom, W. (2017). Additional file 2: of The dynamics of early-state transcriptional changes and aggregate formation in a Huntingtonâ s disease cell model. Figshare. https://doi.org/10.6084/m9.figshare.c.3778547_d2.v1
- van Hagen, M., de Leeuw, W. C., van Roon-Mom, W. M. C., Verschure, P. J., Piebes, D. G. E., Vuist, I. M., Moerland, P. D. & Roon-Mom, W. (2017). Additional file 4: of The dynamics of early-state transcriptional changes and aggregate formation in a Huntington’s disease cell model. Figshare. https://doi.org/10.6084/m9.figshare.c.3778547_d4
- van Hagen, M., de Leeuw, W. C., van Roon-Mom, W. M. C., Verschure, P. J., Piebes, D. G. E., Vuist, I. M., Moerland, P. D. & Roon-Mom, W. (2017). Additional file 6: of The dynamics of early-state transcriptional changes and aggregate formation in a Huntington’s disease cell model. Figshare. https://doi.org/10.6084/m9.figshare.c.3778547_d6.v1
- van Hagen, M., de Leeuw, W. C., van Roon-Mom, W. M. C., Verschure, P. J., Piebes, D. G. E., Vuist, I. M., Moerland, P. D. & Roon-Mom, W. (2017). Additional file 2: of The dynamics of early-state transcriptional changes and aggregate formation in a Huntingtonâ s disease cell model. Figshare. https://doi.org/10.6084/m9.figshare.c.3778547_d2
- van Hagen, M., de Leeuw, W. C., van Roon-Mom, W. M. C., Verschure, P. J., Piebes, D. G. E., Vuist, I. M., Moerland, P. D. & Roon-Mom, W. (2017). Additional file 4: of The dynamics of early-state transcriptional changes and aggregate formation in a Huntington’s disease cell model. Figshare. https://doi.org/10.6084/m9.figshare.c.3778547_d4.v1
- Rauwerda, H., Pagano, J. F. B., Nehrdich, U., Spaink, H. P., Breit, T. M., de Leeuw, W. C., de Jong, M. & Jonker, M. (2017). Additional file 4: of Transcriptome dynamics in early zebrafish embryogenesis determined by high-resolution time course analysis of 180 successive, individual zebrafish embryos. Figshare. https://doi.org/10.6084/m9.figshare.c.3740003_d13.v1
- Rauwerda, H., Pagano, J. F. B., Ensink, W., Nehrdich, U., Spaink, H. P., Breit, T. M., de Leeuw, W. C., de Jong, M. & Jonker, M. (2017). Additional file 7: of Transcriptome dynamics in early zebrafish embryogenesis determined by high-resolution time course analysis of 180 successive, individual zebrafish embryos. Figshare. https://doi.org/10.6084/m9.figshare.c.3740003_d16.v1
- Rauwerda, H., Pagano, J. F. B., Ensink, W., Nehrdich, U., Spaink, H. P., Breit, T. M., de Leeuw, W. C., de Jong, H. M. & Jonker, M. (2017). Additional file 3: of Transcriptome dynamics in early zebrafish embryogenesis determined by high-resolution time course analysis of 180 successive, individual zebrafish embryos. Figshare. https://doi.org/10.6084/m9.figshare.c.3740003_d12.v1
- Rauwerda, H., Pagano, J. F. B., Ensink, W., Nehrdich, U., Spaink, H. P., Breit, T. M., de Leeuw, W. C., de Jong, M. & Jonker, M. (2017). Additional file 1: of Transcriptome dynamics in early zebrafish embryogenesis determined by high-resolution time course analysis of 180 successive, individual zebrafish embryos. Figshare. https://doi.org/10.6084/m9.figshare.c.3740003_d10.v1
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Nevenwerkzaamheden
- Geen nevenwerkzaamheden
Breit, T. M., Leeuw, W. D., van Olst, M., Ensink, W. A., van Leeuwen, S., Jonker, M. J., & Dekker, R. J. (2023). Genome sequences of 10 new carnation mottle virus variants. Microbiology Resource Announcements, 12(9).