Dr. ir. W.C. (Wim) de Leeuw
Faculty of Science
Swammerdam Institute for Life Sciences
Visiting address
- Science Park 904
- Room number: C2.201
Postal address
- Postbus 1212
1000 BE Amsterdam
Contact details
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Publications
2017
Rauwerda, H., Pagano, J. F. B., de Leeuw, W. C., Ensink, W., Nehrdich, U., de Jong, M., Jonker, M., Spaink, H. P., & Breit, T. M. (2017). Transcriptome dynamics in early zebrafish embryogenesis determined by high-resolution time course analysis of 180 successive, individual zebrafish embryos. BMC Genomics, 18, [287]. https://doi.org/10.1186/s12864-017-3672-z [details]- van Hagen, M., Piebes, D. G. E., de Leeuw, W. C., Vuist, I. M., van Roon-Mom, W. M. C., Moerland, P. D., & Verschure, P. J. (2017). The dynamics of early-state transcriptional changes and aggregate formation in a Huntington's disease cell model. BMC Genomics, 18(373), [373]. https://doi.org/10.1186/s12864-017-3745-z [details]
2016
- Pagano, J. F. B., Rauwerda, H., de Leeuw, W. C., Wackers, P., de Jong, M., Ensink, W., ... Breit, T. M. (2016). Transcriptome data on maternal RNA of 24 individual zebrafish eggs from five sibling mothers. Data in Brief, 8, 69-72. https://doi.org/10.1016/j.dib.2016.04.045 [details]
2015
- Bruning, O., Rauwerda, H., Dekker, R. J., de Leeuw, W. C., Wackers, P. F. K., Ensink, W. A., ... Breit, T. M. (2015). Valuable lessons-learned in transcriptomics experimentation. Transcription, 6(3), 51-55. https://doi.org/10.1080/21541264.2015.1064195 [details]
- Locati, M. D., Terpstra, I., de Leeuw, W. C., Kuzak, M., Rauwerda, H., Ensink, W. A., ... Dekker, R. J. (2015). Improving small RNA-seq by using a synthetic spike-in set for size-range quality control together with a set for data normalization. Nucleic Acids Research, 43(14), [e89]. https://doi.org/10.1093/nar/gkv303 [details]
2012
- Marinković, M., de Leeuw, W. C., Ensink, W. A., de Jong, M., Breit, T. M., Admiraal, W., Kraak, M. H. S., & Jonker, M. J. (2012). Gene expression patterns and life cycle responses of toxicant-exposed chironomids. Environmental Science and Technology, 46(22), 12679-12686. https://doi.org/10.1021/es3033617 [details]
- Marinković, M., de Leeuw, W. C., de Jong, M., Kraak, M. H. S., Admiraal, W., Breit, T. M., & Jonker, M. J. (2012). Combining next-generation sequencing and microarray technology into a transcriptomics approach for the non-model organism Chironomus riparius. PLoS ONE, 7(10), e48096. https://doi.org/10.1371/journal.pone.0048096 [details]
2010
- Rauwerda, H., de Jong, M., de Leeuw, W. C., Spaink, H. P., & Breit, T. M. (2010). Integrating heterogeneous sequence information for transcriptome-wide microarray design; a Zebrafish example. BMC Research Notes, 3, 192. https://doi.org/10.1186/1756-0500-3-192 [details]
2009
- de Leeuw, W. C., Rauwerda, H., Inda, M. A., Bruning, O., & Breit, T. M. (2009). SigWinR; the SigWin-detector updated and ported to R. BMC Research Notes, 2(1), [205]. https://doi.org/10.1186/1756-0500-2-205 [details]
2008
- de Leeuw, W. C., Rauwerda, H., Jonker, M. J., & Breit, T. M. (2008). Salvaging Affymetrix probes after probe-level re-annotation. BMC Research Notes, 1, 66. https://doi.org/10.1186/1756-0500-1-66 [details]
2007
- Rauwerda, H., de Leeuw, W. C., Adriaanse, J., Bouwhuis, M., van der Vet, P., & Breit, T. M. (2007). The role of e-BioLabs in a life sciences collaborative working environment. In Proceedings Conference e-Challenges [details]
2003
- Manders, E. M. M., Visser, A. E., Koppen, A., de Leeuw, W. C., van Liere, R., Brakenhoff, G. J., & van Driel, R. (2003). Four-dimensional imaging of chromatin dynamics during the assembly of the interphase nucleus. Chromosome Research, 11, 537-547. https://doi.org/10.1023/A:1024995215340 [details]
2014
- Jonker, M. J., de Leeuw, W. C., Marinković, M., Wittink, F. R. A., Rauwerda, H., Bruning, O., ... Breit, T. M. (2014). Absence/presence calling in microarray-based CGH experiments with non-model organisms. Nucleic Acids Research, 42(11), e94. https://doi.org/10.1093/nar/gku343 [details]
2012
- Marinkovic, M., de Leeuw, W. C., de Jong, M., Admiraal, W., Breit, T. M., Kraak, M. H. S., & Jonker, M. J. (2012). Sequencing the Chironomus riparius transcriptome to compare the sensitivity of gene expression and life-cycle endpoints to toxicant exposure.. Abstract from 6th SETAC World Congress/SETAC Europe 22nd Annual Meeting, Berlin, Germany, May 2012. http://berlin.setac.eu/embed/Berlin/ET_extended_abstracts_Part1.pdf
2020
- Pagano, J. F. B., Locati, M. D., Ensink, W. A., van Olst, M., van Leeuwen, S., de Leeuw, W. C., Nehrdich, U., Spaink, H. P., Rauwerda, H., Jonker, M. J., Dekker, R. J., & Breit, T. M. (2020). Maternal- and Somatic-type snoRNA Expression and Processing in Zebrafish Development. BioRxiv. https://doi.org/10.1101/858936 [details]
2019
- Breit, T. M., Pagano, J. F. B., van der Jagt, P. L., Mittring, E., Ensink, W. A., van Olst, M., van Leeuwen, S., de Leeuw, W., Nehrdich, U., Spaink, H. P., Rauwerda, H., & Dekker, R. J. (2019). New observations on non-coding RNAs involved in the dual translation system in zebrafish development. BioRxiv. https://doi.org/10.1101/869651 [details]
- Pagano, J. F. B., Dekker, R. J., Ensink, W. A., van Olst, M., Bos, A., van Leeuwen, S., de Leeuw, W. C., Nehrdich, U., Spaink, H. P., Rauwerda, H., Jonker, M. J., & Breit, T. M. (2019). An alternative spliceosome defined by distinct snRNAs in early zebrafish embryogenesis. BioRxiv. https://doi.org/10.1101/858944 [details]
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Ancillary activities
- No ancillary activities
Rauwerda, H., Pagano, J. F. B., de Leeuw, W. C., Ensink, W., Nehrdich, U., de Jong, M., Jonker, M., Spaink, H. P., & Breit, T. M. (2017). Transcriptome dynamics in early zebrafish embryogenesis determined by high-resolution time course analysis of 180 successive, individual zebrafish embryos. BMC Genomics, 18, [287].