For best experience please turn on javascript and use a modern browser!
You are using a browser that is no longer supported by Microsoft. Please upgrade your browser. The site may not present itself correctly if you continue browsing.
Coveney, P. V., Groen, D., & Hoekstra, A. G. (2021). Reliability and reproducibility in computational science: implementing validation, verification and uncertainty quantification in silico. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 379(2197), [20200409]. https://doi.org/10.1098/rsta.2020.0409[details]
Coveney, P. V., Hoekstra, A., Rodriguez, B., & Viceconti, M. (2021). Computational biomedicine. Part II: Organs and systems. Interface Focus, 11(1), [20200082]. https://doi.org/10.1098/rsfs.2020.0082[details]
Edeling, W., Arabnejad, H., Sinclair, R., Suleimenova, D., Gopalakrishnan, K., Bosak, B., Groen, D., Mahmood, I., Crommelin, D., & Coveney, P. V. (2021). The impact of uncertainty on predictions of the CovidSim epidemiological code. Nature Computational Science, 1(2), 128-135. https://doi.org/10.1038/s43588-021-00028-9[details]
Gheorghiu, A., Coveney, P. V., & Arabi, A. A. (2021). The influence of external electric fields on proton transfer tautomerism in the guanine-cytosine base pair. Physical Chemistry Chemical Physics, 23(10), 6252-6265. https://doi.org/10.1039/d0cp06218a
Groen, D., Arabnejad, H., Jancauskas, V., Edeling, W. N., Jansson, F., Richardson, R. A., Lakhlili, J., Veen, L., Bosak, B., Kopta, P., Wright, D. W., Monnier, N., Karlshoefer, P., Suleimenova, D., Sinclair, R., Vassaux, M., Nikishova, A., Bieniek, M., Luk, O. O., ... Coveney, P. V. (2021). VECMAtk: a scalable verification, validation and uncertainty quantification toolkit for scientific simulations. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences, 379(2197), [20200221]. https://doi.org/10.1098/rsta.2020.0221[details]
McCullough, J. W. S., & Coveney, P. V. (2021). An efficient, localised approach for the simulation of elastic blood vessels using the lattice Boltzmann method. Scientific Reports, 11(1), [24260]. https://doi.org/10.1038/s41598-021-03584-2
McCullough, J. W. S., & Coveney, P. V. (2021). High fidelity blood flow in a patient-specific arteriovenous fistula. Scientific Reports, 11(1), [22301]. https://doi.org/10.1038/s41598-021-01435-8
Suleimenova, D., Arabnejad, H., Edeling, W. N., Coster, D., Luk, O. O., Lakhlili, J., Jancauskas, V., Kulczewski, M., Veen, L., Ye, D., Zun, P., Krzhizhanovskaya, V., Hoekstra, A., Crommelin, D., Coveney, P. V., & Groen, D. (2021). Tutorial applications for Verification, Validation and Uncertainty Quantification using VECMA toolkit. Journal of Computational Science, 53, [101402]. https://doi.org/10.1016/j.jocs.2021.101402[details]
Suter, J. L., & Coveney, P. V. (2021). Principles governing control of aggregation and dispersion of aqueous graphene oxide. Scientific Reports, 11(1), [22460]. https://doi.org/10.1038/s41598-021-01626-3
2020
Wright, D. W., Richardson, R. A., Edeling, W., Lakhlili, J., Sinclair, R. C., Jancauskas, V., Suleimenova, D., Bosak, B., Kulczewski, M., Piontek, T., Kopta, P., Chirca, I., Arabnejad, H., Luk, O. O., Hoenen, O., Węglarz, J., Crommelin, D., Groen, D., & Coveney, P. V. (2020). Building Confidence in Simulation: Applications of EasyVVUQ. Advanced Theory and Simulations, 3(8), [1900246]. https://doi.org/10.1002/adts.201900246[details]
Alowayyed, S., Piontek, T., Suter, J. L., Hoenen, O., Groen, D., Luk, O., Bosak, B., Kopta, P., Kurowski, K., Perks, O., Brabazon, K., Jancauskas, V., Coster, D., Coveney, P. V., & Hoekstra, A. G. (2019). Patterns for High Performance Multiscale Computing. Future Generation Computer Systems, 91, 335-346. https://doi.org/10.1016/j.future.2018.08.045[details]
Alowayyed, S., Vassaux, M., Czaja, B., Coveney, P. V., & Hoekstra, A. G. (2019). Towards heterogeneous multi-scale computing on large scale parallel supercomputers. Supercomputing Frontiers and Innovations, 6(4), 20-43. https://doi.org/10.14529/jsfi190402[details]
Groen, D., Richardson, R. A., Wright, D. W., Jancauskas, V., Sinclair, R., Karlshoefer, P., ... Coveney, P. V. (2019). Introducing VECMAtk - Verification, Validation and Uncertainty Quantification for Multiscale and HPC Simulations. In J. M. F. Rodrigues, P. J. S. Cardoso, J. Monteiro, R. Lam, V. V. Krzhizhanovskaya, M. H. Lees, J. J. Dongarra, ... P. M. A. Sloot (Eds.), Computational Science – ICCS 2019 : 19th International Conference Faro, Portugal, June 12-14, 2019 Proceedings (Vol. IV, pp. 479-492). (Lecture Notes in Computer Science; Vol. 11539). Cham: Springer. https://doi.org/10.1007/978-3-030-22747-0_36[details]
Hoekstra, A. G., Chopard, B., Coster, D., Portegies Zwart, S., & Coveney, P. V. (2019). Multiscale computing for science and engineering in the era of exascale performance. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences, 377(2142), [20180144]. https://doi.org/10.1098/rsta.2018.0144[details]
Hoekstra, A. G., Portegies Zwart, S., & Coveney, P. V. (2019). Multiscale modelling, simulation and computing: from the desktop to the exascale. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences, 377(2142), [20180355]. https://doi.org/10.1098/rsta.2018.0355[details]
2017
Alowayyed, S., Groen, D., Coveney, P. V., & Hoekstra, A. G. (2017). Multiscale computing in the exascale era. Journal of Computational Science, 22, 15-25. https://doi.org/10.1016/j.jocs.2017.07.004[details]
Borgdorff, J., Ben Belgacem, M., Bona-Casas, C., Fazendeiro, L., Groen, D., Hoenen, O., Mizeranschi, A., Sutter, J. L., Coster, D., Coveney, P. V., Dubitzky, W., Hoekstra, A. G., Strand, P., & Chopard, B. (2014). Performance of distributed multiscale simulations. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences, 372(2021), [20130407]. https://doi.org/10.1098/rsta.2013.0407[details]
Borgdorff, J., Mamonski, M., Bosak, B., Kurowski, K., Ben Belgacem, M., Chopard, B., Groen, D., Coveney, P. V., & Hoekstra, A. G. (2014). Distributed multiscale computing with MUSCLE 2, the Multiscale Coupling Library and Environment. Journal of Computational Science, 5(5), 719-731. https://doi.org/10.1016/j.jocs.2014.04.004[details]
Hoekstra, A., Chopard, B., & Coveney, P. (2014). Multiscale modelling and simulation: a position paper. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences, 372(2021), [20130377]. https://doi.org/10.1098/rsta.2013.0377[details]
Karabasov, S., Nerukh, D., Hoekstra, A., Chopard, B., & Coveney, P. V. (2014). Multiscale modelling: approaches and challenges. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences, 372(2021), [20130390]. https://doi.org/10.1098/rsta.2013.0390[details]
Groen, D., Borgdorff, J., Bona-Casas, C., Hetherington, J., Nash, R. W., Zasada, S. J., Saverchenko, I., Mamonski, M., Kurowski, K., Bernabeu, M. O., Hoekstra, A. G., & Coveney, P. V. (2013). Flexible composition and execution of high performance, high fidelity multiscale biomedical simulations. Interface Focus, 3(2), [20120087]. https://doi.org/10.1098/rsfs.2012.0087[details]
Zasada, S. J., Mamonski, M., Groen, D., Borgdorff, J., Saverchenko, I., Piontek, T., Kurowski, K., & Coveney, P. V. (2012). Distributed infrastructure for multiscale computing. In A. Boukerche, V. Cahill, A. El-Saddik, G. Theodoropoulos, & R. Walshe (Eds.), 2012 IEEE/ACM 16th International Symposium on Distributed Simulation and Real Time Applications: DS-RET 2012: Proceedings (pp. 65-74). IEEE Computer Society. https://doi.org/10.1109/DS-RT.2012.17[details]
Sloot, P. M. A., Coveney, P. V., Ertaylan, G., Müller, V., Boucher, C. A., & Bubak, M. (2009). HIV decision support: From molecule to man. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences, 367(1898), 2691-2703. https://doi.org/10.1098/rsta.2009.0043[details]
Sloot, P., Coveney, P., Bubak, M. T., Vandamme, A-M., Ó Nualláin, B., van de Vijver, D., & Boucher, C. (2008). Multi-science decision support for HIV drug resistance treatment. Studies in Health Technology and Informatics, 138, 188-198. http://www.science.uva.nl/research/scs/papers/archive/Sloot2008c.pdf[details]
2014
Karabasov, S. (Guest ed.), Nerukh, D. (Guest ed.), Hoekstra, A. (Guest ed.), Chopard, B. (Guest ed.), & Coveney, P. (Guest ed.) (2014). Multi-scale systems in fluids and soft matter: approaches, numerics and applications: papers of a theme issue. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences, 372(2021). http://rsta.royalsocietypublishing.org/content/372/2021[details]
2012
Borgdorff, J., Groen, D., Ferlin, S., Saverchenko, I., Suter, J., Hoekstra, A. G., & Coveney, P. V. (2012). Multiscale Simulations on Distributed European e-Infrastructures. Inside, 10(1), 72-77. http://inside.hlrs.de/assets/pdfs/inside_spring12.pdf
2012
Groen, D., Borgdorff, J., Zasada, S. J., Bona Casas, C., Hetherington, J., Nash, R., Hoekstra, A. G., & Coveney, P. (2012). A Distributed Infrastructure for Multiscale Biomedical Simulations. Abstract from VPH 2012 Conference of the Virtual Physiological Human Network of Excellence, London, United Kingdom.
2020
Nikishova, A. (2020). Uncertainty quantification of multiscale models. [details]
Arabnejad, H., Groen, D. J., Gopalakrishnan, K., Bosak, B., Crommelin, D., Coveney, P. V., Suleimenova, D., Edeling, W. & Mahmood, I. (16-1-2021). FabCovidSim. Zenodo. https://doi.org/10.5281/zenodo.4445290
The UvA website uses cookies and similar technologies to ensure the basic functionality of the site and for statistical and optimisation purposes. It also uses cookies to display content such as YouTube videos and for marketing purposes. This last category consists of tracking cookies: these make it possible for your online behaviour to be tracked. You consent to this by clicking on Accept. Also read our Privacy statement
Necessary
Cookies that are essential for the basic functioning of the website. These cookies are used to enable students and staff to log in to the site, for example.
Necessary & Optimalisation
Cookies that collect information about visitor behaviour anonymously to help make the website work more effectively.
Necessary & Optimalisation & Marketing
Cookies that make it possible to track visitors and show them personalised adverts. These are used by third-party advertisers to gather data about online behaviour. To watch Youtube videos you need to enable this category.