Ing. W.A. (Wim) Ensink
Faculty of Science
Swammerdam Institute for Life Sciences
Visiting address
- Science Park 904
- Room number: C2.272
Postal address
- Postbus 1212
1000 BE Amsterdam
Contact details
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Publications
2018
- Locati, M. D., Pagano, J. F. B., Abdullah, F., Ensink, W. A., van Olst, M., van Leeuwen, S., Nehrdich, U., Spaink, H. P., Rauwerda, H., Jonker, M. J., Dekker, R. J., & Breit, T. M. (2018). Identifying small RNAs derived from maternal- and somatic-type rRNAs in zebrafish development. Genome, 61(5), 371-378. https://doi.org/10.1139/gen-2017-0202 [details]
2017
Locati, M. D., Pagano, J. F. B., Ensink, W. A., van Olst, M., van Leeuwen, S., Nehrdich, U., Zhu, K., Spaink, H. P., Girard, G., Rauwerda, H., Jonker, M. J., Dekker, R. J., & Breit, T. M. (2017). Linking Maternal and Somatic 5S rRNA types with Different Sequence-Specific Non-LTR Retrotransposons. RNA, 23(4), 446-456. https://doi.org/10.1261/rna.059642.116 [details]- Locati, M. D., Pagano, J. F. B., Girard, G., Ensink, W. A., van Olst, M., van Leeuwen, S., Nehrdich, U., Spaink, H. P., Rauwerda, H., Jonker, M. J., Dekker, R. J., & Breit, T. M. (2017). Expression of distinct maternal and somatic 5.8S, 18S, and 28S rRNA types during zebrafish development. RNA, 23(8), 1188-1199. https://doi.org/10.1261/rna.061515.117 [details]
- Rauwerda, H., Pagano, J. F. B., de Leeuw, W. C., Ensink, W., Nehrdich, U., de Jong, M., Jonker, M., Spaink, H. P., & Breit, T. M. (2017). Transcriptome dynamics in early zebrafish embryogenesis determined by high-resolution time course analysis of 180 successive, individual zebrafish embryos. BMC Genomics, 18, [287]. https://doi.org/10.1186/s12864-017-3672-z [details]
2016
- Bruning, O., Rodenburg, W., Wackers, P. F. K., van Oostrom, C., Jonker, M. J., Dekker, R. J., Rauwerda, H., Ensink, W. A., de Vries, A., & Breit, T. M. (2016). Confounding Factors in the Transcriptome Analysis of an In-Vivo Exposure Experiment. PLoS ONE, 11(1), [e0145252]. https://doi.org/10.1371/journal.pone.0145252 [details]
- Pagano, J. F. B., Rauwerda, H., de Leeuw, W. C., Wackers, P., de Jong, M., Ensink, W., Dekker, R., Nehrdich, U., Spaink, H. P., Jonker, M., & Breit, T. M. (2016). Transcriptome data on maternal RNA of 24 individual zebrafish eggs from five sibling mothers. Data in Brief, 8, 69-72. https://doi.org/10.1016/j.dib.2016.04.045 [details]
- Rauwerda, H., Wackers, P., Pagano, J. F. B., de Jong, M., Ensink, W., Dekker, R., Nehrdich, U., Spaink, H. P., Jonker, M., & Breit, T. M. (2016). Mother-Specific Signature in the Maternal Transcriptome Composition of Mature, Unfertilized Zebrafish Eggs. PLoS ONE, 11(1), [e0147151]. https://doi.org/10.1371/journal.pone.0147151 [details]
2015
- Bruning, O., Rauwerda, H., Dekker, R. J., de Leeuw, W. C., Wackers, P. F. K., Ensink, W. A., Jonker, M. J., & Breit, T. M. (2015). Valuable lessons-learned in transcriptomics experimentation. Transcription, 6(3), 51-55. https://doi.org/10.1080/21541264.2015.1064195 [details]
- Locati, M. D., Terpstra, I., de Leeuw, W. C., Kuzak, M., Rauwerda, H., Ensink, W. A., van Leeuwen, S., Nehrdich, U., Spaink, H. P., Jonker, M. J., Breit, T. M., & Dekker, R. J. (2015). Improving small RNA-seq by using a synthetic spike-in set for size-range quality control together with a set for data normalization. Nucleic Acids Research, 43(14), [e89]. https://doi.org/10.1093/nar/gkv303 [details]
2022
- Rauwerda, J., Pagano, J. F. B., de Leeuw, W. C., Ensink, W. A., van Olst, M., Nehrdich, U., Jonker, M. J., Spaink, H. P., & Breit, T. M. (2022). Cellular Factors Involved in Transcriptome Dynamics in Early Zebrafish Embryogenesis. (v1 ed.) BioRxiv. https://doi.org/10.1101/2022.09.29.510050 [details]
2020
- Breit, T. M., Rauwerda, J., Pagano, J. F. B., Ensink, W. A., Nehrdich, U., Spaink, H. P., & Dekker, R. J. (2020). Immunoglobulin switch-like recombination regions implicated in the formation of extrachromosomal circular 45S rDNA involved in the maternal-specific translation system of zebrafish. BioRxiv. https://doi.org/10.1101/2020.01.31.928739 [details]
- Dekker, R. J., Ensink, W. A., van Leeuwen, S., Rauwerda, J., & Breit, T. M. (2020). Overhauling a faulty control in the CDC-recommended SARS-CoV-2 RT-PCR test panel: Overhauling a faulty control in the CDC-recommended SARS-CoV-2 RT-PCR test panel. BioRxiv. https://doi.org/10.1101/2020.06.12.147819
- Pagano, J. F. B., Locati, M. D., Ensink, W. A., van Olst, M., van Leeuwen, S., de Leeuw, W. C., Nehrdich, U., Spaink, H. P., Rauwerda, H., Jonker, M. J., Dekker, R. J., & Breit, T. M. (2020). Maternal- and Somatic-type snoRNA Expression and Processing in Zebrafish Development. BioRxiv. https://doi.org/10.1101/858936 [details]
2019
- Breit, T. M., Pagano, J. F. B., van der Jagt, P. L., Mittring, E., Ensink, W. A., van Olst, M., van Leeuwen, S., de Leeuw, W., Nehrdich, U., Spaink, H. P., Rauwerda, H., & Dekker, R. J. (2019). New observations on non-coding RNAs involved in the dual translation system in zebrafish development. BioRxiv. https://doi.org/10.1101/869651 [details]
- Pagano, J. F. B., Dekker, R. J., Ensink, W. A., van Olst, M., Bos, A., van Leeuwen, S., de Leeuw, W. C., Nehrdich, U., Spaink, H. P., Rauwerda, H., Jonker, M. J., & Breit, T. M. (2019). An alternative spliceosome defined by distinct snRNAs in early zebrafish embryogenesis. BioRxiv. https://doi.org/10.1101/858944 [details]
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Ancillary activities
- No ancillary activities
Locati, M. D., Pagano, J. F. B., Ensink, W. A., van Olst, M., van Leeuwen, S., Nehrdich, U., Zhu, K., Spaink, H. P., Girard, G., Rauwerda, H., Jonker, M. J., Dekker, R. J., & Breit, T. M. (2017). Linking Maternal and Somatic 5S rRNA types with Different Sequence-Specific Non-LTR Retrotransposons. RNA, 23(4), 446-456.